Ecor007690.1
Basic Information
- Insect
- Electrophaes corylata
- Gene Symbol
- -
- Assembly
- GCA_947095575.1
- Location
- OX352724.1:1381835-1385122[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.006 0.3 11.8 4.8 1 23 155 178 155 178 0.95 2 17 0.00023 0.012 16.2 1.1 1 23 187 210 187 210 0.96 3 17 0.11 5.6 7.8 0.5 2 23 223 245 223 245 0.97 4 17 0.00056 0.028 15.0 3.4 1 23 254 277 254 277 0.97 5 17 0.00015 0.0077 16.8 1.4 2 23 289 311 288 311 0.95 6 17 3.6e-05 0.0018 18.8 0.3 2 23 340 362 339 362 0.96 7 17 1.1e-05 0.00053 20.4 1.2 2 23 372 394 371 394 0.96 8 17 0.27 14 6.5 1.4 3 19 400 416 398 418 0.94 9 17 4.6e-05 0.0023 18.4 0.1 2 23 424 446 423 446 0.97 10 17 0.004 0.2 12.3 0.4 3 23 456 477 455 477 0.96 11 17 3.6e-05 0.0018 18.7 6.0 1 23 482 505 482 505 0.98 12 17 0.19 9.4 7.1 5.1 1 23 516 539 516 539 0.91 13 17 1.6 82 4.1 2.1 1 23 558 581 558 582 0.91 14 17 4.7 2.3e+02 2.7 2.0 12 23 597 608 587 608 0.81 15 17 0.12 6.2 7.6 2.1 2 23 614 635 613 635 0.97 16 17 0.016 0.79 10.4 0.3 1 23 701 723 701 723 0.97 17 17 0.091 4.6 8.0 1.8 1 23 729 752 729 752 0.97
Sequence Information
- Coding Sequence
- ATGCCTCTGCCATTAGATATTGAAAATAAACTGGATAATGATGAACGTAAAGACCCAACCTCTTTTCTGCCACAAGAAGAAATGAGTTATGAGATTAAAAAGAAAAAAAAGAAGAAGAAAAAGAAAGAGCAAGAAGACCCTTTTAAAGATGTAGAACAGACATTATCTGTGATTCGAGAACCGGATATAACTGCTTTAGATCCAGATATTGGGTCCTTGGATCCGGAAGTTACAATCAAGGTTGAGGATATTGAGTTAACCTTGAATATTGGTGAATTTGACAATGATGAAGGAATACATGATGATGGCTACGAGGAGACCCATCAAGAACCCTCAGTGAAACTCGAGGACCAGAGCCGAGATGCTGTAGTTCTTACCTTCCAGAACATCATCAGCGATAATTTAATCAGTGACAAACTTCTTAAAGGAGAGAAAATTAAGCTTGAATCATCCGGCGAAAACCACTTCTGTGAGGTTTGCCATCTAGTGTTCAAAACTGCCAAGTCTCTAGACACGCACAGGAAACGCACACACAAGCATTATAGGAAGTCTTTTGCACACATATGTGATGACTGCGGGATGTCATATCAGTTTAAGAACAGTCTGGTTGCTCATATAAGAAGAAAACATGGCCCGGATGTGGTTAAAGACGATATGTTGGAGAGAACATGTGATTTGTGCGCGCTGGTCTTCAAAGGACAGGCTAGAATCCGTATGCATATGAGACGAAAACATGGATTTTATGAAGACTCGTTTAACCATGAGTGCGAGTACTGCGGGCTCACTTATGAAAAACAGTGCAGTTTACTTGTTCATATCCGCAGAAAGCATACACACAAAACTAAACCAAGAAAGCAATGGCTGAACTGCCCATTTTGTGGCAGATTTTTTGATAAAAGAGAGACATACACTCGCCATATACAAAGAAACCATCGGATTAATGATGAAGATGGAAAGCTTAAAGATAATGATGCTGAGTTTAGACTAACTTACACAAATGAAAAAACTGGGGAACTCACATGTAGTCAATGTCCGCTAGCTTTTTCTACTGTAGGCTACCTTAAATGGCATATGAGAAGAAAGCATAACGCAATGATAGATGATTTTAGACTTAAATGTAAGATTTGTAACCTGTCGTACGCAAACTCTGAAAGTTTAAAGAGACATGTGCGAAGAAAACATGATAAAGGAACATTCTGTTACGAGTGCAATAGACAGTTTGCTGATAGAGAAACGTTTTTAAATCACTCTCATGCTAAAGTTGTTAAAGAATGTACCTTATGTGGATTGATATTTGCTAGTCAGGGTGGTTTGGCAAAGCATTTGAGGACAACTCACAAATTAGACAGTCCAAAAACTGTTTTCTGCCCGGTTTGCAACCAAGGTTTTGTAAACAAACGACAGTTGAAACCACATTACAACCGTGTACATCTAAAAGTGACATACACTTGTAAGTTTTGTGGTAAAGTGTTTAAAACTAGAGAGTGTTATAGAAAGCATGTAATGACCAAACACCCATCACCATCCGTGGATGAAAATAAAATGCACCAATGTGAAAAGTGCCCGGATAGTTTTAAAGATGAATTTGAACTTTGCAAGCACAATAATTTCACTCACGGAGATATAAAACCTGTAATTATCAAGAAAGAGGAAGAGGATATTAAAAATATATTTAAATGTACCAAATGTACAGATGAATTTCTCACCTGGGACTTGTTGAGAGTTCATTTTGAACAAACACATCATATGATCGAGGAAGTCCAATGTCAGGTTTGTGGAGACCTGATGAACAGAGGCGAGTTAATCAAGCATATGAAGGTCCACGATGAAATTGAGGTGCAATGCAGATTTTGTGAATTTAAAAGCAAAAATCGTGTCAGTATGACACAGCATATGCTAAGGCACAAAAATGCTACAACATTAAACTGTGACTACCCTAACTGCAGATACAAAACTTTCTACGACAACGCTATGGTAAAACATAAGAAGAGACATCAAGAATTAGGTGTTAAATTGCAGTGTACAAGCTGCCCGTTCCAAACTATGAACAAATACATTTTAAGGTATCATGAAGAGGCTCATCTCACAGGCAAGAAACGGTATAAGTGTGACAAATGTGAATATGCCACGATTCTACCGGCGAATTTAGTTCAGCACAAGTATAAGCATTCCGCGGAGAAGAGGTTTAAATGTGAGGTTTGCCCATTTGCTACTAAGTATAACACGTCCCTGCGATTTCATGTTAAAACAAAACACTGTGATCTTCCTAGTATGAGTAAGGATTAA
- Protein Sequence
- MPLPLDIENKLDNDERKDPTSFLPQEEMSYEIKKKKKKKKKKEQEDPFKDVEQTLSVIREPDITALDPDIGSLDPEVTIKVEDIELTLNIGEFDNDEGIHDDGYEETHQEPSVKLEDQSRDAVVLTFQNIISDNLISDKLLKGEKIKLESSGENHFCEVCHLVFKTAKSLDTHRKRTHKHYRKSFAHICDDCGMSYQFKNSLVAHIRRKHGPDVVKDDMLERTCDLCALVFKGQARIRMHMRRKHGFYEDSFNHECEYCGLTYEKQCSLLVHIRRKHTHKTKPRKQWLNCPFCGRFFDKRETYTRHIQRNHRINDEDGKLKDNDAEFRLTYTNEKTGELTCSQCPLAFSTVGYLKWHMRRKHNAMIDDFRLKCKICNLSYANSESLKRHVRRKHDKGTFCYECNRQFADRETFLNHSHAKVVKECTLCGLIFASQGGLAKHLRTTHKLDSPKTVFCPVCNQGFVNKRQLKPHYNRVHLKVTYTCKFCGKVFKTRECYRKHVMTKHPSPSVDENKMHQCEKCPDSFKDEFELCKHNNFTHGDIKPVIIKKEEEDIKNIFKCTKCTDEFLTWDLLRVHFEQTHHMIEEVQCQVCGDLMNRGELIKHMKVHDEIEVQCRFCEFKSKNRVSMTQHMLRHKNATTLNCDYPNCRYKTFYDNAMVKHKKRHQELGVKLQCTSCPFQTMNKYILRYHEEAHLTGKKRYKCDKCEYATILPANLVQHKYKHSAEKRFKCEVCPFATKYNTSLRFHVKTKHCDLPSMSKD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01429284;
- 90% Identity
- iTF_01429284; iTF_01220010;
- 80% Identity
- -