Basic Information

Insect: Plemyria rubiginata
Gene Symbol: prg
Assembly: GCA_963576535.1
Location: OY754908.1:9702150-9703975[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.26 17 6.6 0.7 2 20 178 196 177 200 0.82

2 10 0.0024 0.16 13.0 0.6 1 23 206 229 206 229 0.96

3 10 1.3e-05 0.00084 20.1 3.5 1 23 235 257 235 257 0.96

4 10 4.4e-07 2.9e-05 24.7 4.9 1 23 263 285 263 285 0.99

5 10 6.1e-05 0.004 18.0 0.0 1 23 291 313 291 313 0.97

6 10 0.00041 0.027 15.4 1.1 1 23 319 341 319 341 0.96

7 10 0.00015 0.0099 16.8 1.1 2 23 431 453 430 453 0.93

8 10 0.00034 0.022 15.7 1.8 1 20 459 478 459 481 0.93

9 10 1.8e-05 0.0012 19.7 3.1 1 23 487 509 487 509 0.97

10 10 0.0017 0.11 13.5 0.0 3 23 518 538 516 538 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.26	17	6.6	0.7	2	20	178	196	177	200	0.82
2	10	0.0024	0.16	13.0	0.6	1	23	206	229	206	229	0.96
3	10	1.3e-05	0.00084	20.1	3.5	1	23	235	257	235	257	0.96
4	10	4.4e-07	2.9e-05	24.7	4.9	1	23	263	285	263	285	0.99
5	10	6.1e-05	0.004	18.0	0.0	1	23	291	313	291	313	0.97
6	10	0.00041	0.027	15.4	1.1	1	23	319	341	319	341	0.96
7	10	0.00015	0.0099	16.8	1.1	2	23	431	453	430	453	0.93
8	10	0.00034	0.022	15.7	1.8	1	20	459	478	459	481	0.93
9	10	1.8e-05	0.0012	19.7	3.1	1	23	487	509	487	509	0.97
10	10	0.0017	0.11	13.5	0.0	3	23	518	538	516	538	0.92

Sequence Information

Coding Sequence: ATGGAAGATTCCTACATCATCGCGAATTTCCATGCGCTGTGTCGGTTATGCCTGAACAAAAGCGCGCTGTCGGTGTCGATTTACGGGGCTGCGCCCGATGACGAAGCCAATGTATCGCTAACCTCTAAAATTGCAGAATGCTGCGAACTACAGATTGATGCCAATGATGGGTTGCCAGGAATAATTTGCTACAAATGCTTACTGAAAGTAGATAAATGTTCCAAATTTAAAGTACAATGCATACAGAATGACAACAGGTTGAGACAGATCACCAACCGTGTTAATGATCTGGATAATTCAAACTCATCAGAACTTAGCAATTATAATTACAACAACTGCCATGACCAGCAGAAACCAAAGCCTGAAGACTACATTGTTGAAGACAGTGTTGTGATGGTAGTAGATCCAAGCCTCGACTATGACTCATCAGAAGAGTCTGAAGGTGTGGAGACAGTAGAACCAGAGGTTACCGAAAGAGACCACAACCCAGAGCAAGAAACTAATACAGAGTcattctttaaaaatgtatcTATGTGTCAATACTGTGATCAAGCTTTTGTATCTCCAGAGAAATGCAAGGAACATGAGATTGCATACCATGACCCCAATCTACCATACAAATGTATGGAATGTAGTCTAGTATTTGCAGAGCGCTCACAGTACGTACAGCACACTAAACAAGTTCATGGCAATGATAAGCCATATCACTGCCCTGAGTGTGAAAAATGCTTTGGGCGCCGATCAGATTTGAGAAAACATTCTATTGTACACACGGGCATAAGACCATACCAGTGCCATTACTGCCTTAAAAGTTTCTCACGTAACACTAACTTGAGTAAACATCTTCGTATTCATGCTGGACACAAACCACATGTTTGTCCATTATGTCCGAGGAGTTTTGTAGCTAAAGGAGATTTGGCACGCCATGTGCTCATTCATTCAGGCATGAAGCCTTACAGATGTAGAAAGTGCCCTCTCACATTCGGTCGACGAGATAAACTTATCAAGCATGAAGTCAAGCATGGTCCTGTTACTCcagaacataataattattatgacaaCAACCAAGATATGCATGACATGGTTGTGAATGTCAATCCCTTTAGCAACCTTATGACATCCCCTACACAGAACAATGCTGATGGATCTCAAGCAGACTATGACCTCCCCCGAGTCCCAGACCACATTTCAGGTGAAAGTACTTTCAGCAGAGTCCAAAAAACTCCTACATCCCGACAACAAAACTCCCCAAAAAAACCGACATTGGCTAAAAATAGGCCTAAGAATATTAAGTGCCACCAGTGTCCAAAAAGATTCTCATCTTTGGATGCTTACAAGACACATGTTTCTTTAGCCCACATTGGGTCTAGAGTTTTCCAATGTAAAGTTTGCTTTAAGAAGTTTGCCCGTAAAAGAGAACTAGATCGACATACTCCCATGCACTCTGGTATGAAGCCTTTTTCGTGTAGTCAATGTGACAAAAAGTTCACCAGAAAAGACAAACTCGACAAGCATGAGCAGAGCCATGAATGCTTGGTTGTTAATATGCCTTGTATAGAATGTGGTGCCACATTTGAAAAGAAAGCAGATTTAGTTGCCCACATCAAGTCTCATTTCACTGATAATTTTGATGATAAAATATCGGAAATAAAAAAGGAAGATGAACCTGAGTTTCAGCTTGATGATAATTTTTATGATTTAGAAACTTGA
Protein Sequence: MEDSYIIANFHALCRLCLNKSALSVSIYGAAPDDEANVSLTSKIAECCELQIDANDGLPGIICYKCLLKVDKCSKFKVQCIQNDNRLRQITNRVNDLDNSNSSELSNYNYNNCHDQQKPKPEDYIVEDSVVMVVDPSLDYDSSEESEGVETVEPEVTERDHNPEQETNTESFFKNVSMCQYCDQAFVSPEKCKEHEIAYHDPNLPYKCMECSLVFAERSQYVQHTKQVHGNDKPYHCPECEKCFGRRSDLRKHSIVHTGIRPYQCHYCLKSFSRNTNLSKHLRIHAGHKPHVCPLCPRSFVAKGDLARHVLIHSGMKPYRCRKCPLTFGRRDKLIKHEVKHGPVTPEHNNYYDNNQDMHDMVVNVNPFSNLMTSPTQNNADGSQADYDLPRVPDHISGESTFSRVQKTPTSRQQNSPKKPTLAKNRPKNIKCHQCPKRFSSLDAYKTHVSLAHIGSRVFQCKVCFKKFARKRELDRHTPMHSGMKPFSCSQCDKKFTRKDKLDKHEQSHECLVVNMPCIECGATFEKKADLVAHIKSHFTDNFDDKISEIKKEDEPEFQLDDNFYDLET

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00318316;
90% Identity: iTF_00632992;
80% Identity: -