Basic Information

Insect: Plemyria rubiginata
Gene Symbol: -
Assembly: GCA_963576535.1
Location: OY754909.1:4532038-4541815[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 25 5.5 3.6e+02 2.4 0.4 3 14 630 642 629 644 0.86

2 25 0.005 0.33 12.0 1.5 3 23 744 765 743 765 0.96

3 25 5.2 3.4e+02 2.5 1.1 4 23 1124 1145 1122 1145 0.84

4 25 0.082 5.3 8.2 0.6 1 21 1150 1170 1150 1171 0.96

5 25 8.8 5.7e+02 1.8 0.4 1 23 1212 1235 1212 1235 0.90

6 25 0.012 0.77 10.8 1.7 5 21 1248 1264 1246 1265 0.92

7 25 0.36 23 6.2 0.6 2 23 1273 1295 1272 1295 0.93

8 25 0.14 8.9 7.5 1.0 3 23 1314 1335 1312 1335 0.94

9 25 0.002 0.13 13.3 0.8 3 23 1342 1363 1340 1363 0.93

10 25 0.16 10 7.3 0.0 1 23 1389 1412 1389 1412 0.90

11 25 0.024 1.5 9.9 3.4 1 23 1417 1439 1417 1439 0.97

12 25 0.014 0.89 10.6 0.3 1 23 1445 1468 1445 1468 0.96

13 25 0.005 0.33 12.0 0.8 1 23 1478 1500 1478 1500 0.97

14 25 0.00022 0.014 16.3 1.8 1 23 1552 1575 1552 1575 0.97

15 25 0.003 0.19 12.7 1.4 1 23 1635 1658 1635 1658 0.96

16 25 0.0025 0.17 12.9 1.5 2 23 1687 1709 1686 1709 0.95

17 25 0.025 1.6 9.8 0.1 2 23 1715 1737 1714 1737 0.94

18 25 0.0081 0.52 11.3 0.3 1 21 1781 1801 1781 1802 0.95

19 25 0.0015 0.1 13.6 0.6 1 23 1812 1834 1812 1834 0.93

20 25 0.0008 0.052 14.5 0.3 2 23 1928 1950 1928 1950 0.93

21 25 9.6e-08 6.2e-06 26.8 1.1 3 23 1957 1977 1956 1977 0.98

22 25 0.012 0.77 10.8 0.3 1 23 1997 2019 1997 2020 0.94

23 25 0.43 28 5.9 0.0 1 23 2041 2063 2041 2063 0.97

24 25 0.037 2.4 9.3 0.6 1 23 2069 2092 2069 2092 0.95

25 25 0.00046 0.03 15.3 0.4 1 23 2100 2123 2100 2123 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	25	5.5	3.6e+02	2.4	0.4	3	14	630	642	629	644	0.86
2	25	0.005	0.33	12.0	1.5	3	23	744	765	743	765	0.96
3	25	5.2	3.4e+02	2.5	1.1	4	23	1124	1145	1122	1145	0.84
4	25	0.082	5.3	8.2	0.6	1	21	1150	1170	1150	1171	0.96
5	25	8.8	5.7e+02	1.8	0.4	1	23	1212	1235	1212	1235	0.90
6	25	0.012	0.77	10.8	1.7	5	21	1248	1264	1246	1265	0.92
7	25	0.36	23	6.2	0.6	2	23	1273	1295	1272	1295	0.93
8	25	0.14	8.9	7.5	1.0	3	23	1314	1335	1312	1335	0.94
9	25	0.002	0.13	13.3	0.8	3	23	1342	1363	1340	1363	0.93
10	25	0.16	10	7.3	0.0	1	23	1389	1412	1389	1412	0.90
11	25	0.024	1.5	9.9	3.4	1	23	1417	1439	1417	1439	0.97
12	25	0.014	0.89	10.6	0.3	1	23	1445	1468	1445	1468	0.96
13	25	0.005	0.33	12.0	0.8	1	23	1478	1500	1478	1500	0.97
14	25	0.00022	0.014	16.3	1.8	1	23	1552	1575	1552	1575	0.97
15	25	0.003	0.19	12.7	1.4	1	23	1635	1658	1635	1658	0.96
16	25	0.0025	0.17	12.9	1.5	2	23	1687	1709	1686	1709	0.95
17	25	0.025	1.6	9.8	0.1	2	23	1715	1737	1714	1737	0.94
18	25	0.0081	0.52	11.3	0.3	1	21	1781	1801	1781	1802	0.95
19	25	0.0015	0.1	13.6	0.6	1	23	1812	1834	1812	1834	0.93
20	25	0.0008	0.052	14.5	0.3	2	23	1928	1950	1928	1950	0.93
21	25	9.6e-08	6.2e-06	26.8	1.1	3	23	1957	1977	1956	1977	0.98
22	25	0.012	0.77	10.8	0.3	1	23	1997	2019	1997	2020	0.94
23	25	0.43	28	5.9	0.0	1	23	2041	2063	2041	2063	0.97
24	25	0.037	2.4	9.3	0.6	1	23	2069	2092	2069	2092	0.95
25	25	0.00046	0.03	15.3	0.4	1	23	2100	2123	2100	2123	0.96

Sequence Information

Coding Sequence: atgaCTGTGAACTATGATCGTGTTTGTAGACTTTGCTTGTCATCTCGAGGCGAGCTACTGCCGATTTTCCCTACCACCAGTTCGGATGACATGGAACCTCCCATCCTCGCTTCTAAAATAAAGGATTGTGTGTCTGTAGAGATAAACGAAAATGACGACCTGCCGACGACTGTCTGCAGGAAATGCGTGGACAATGTCAACAACTGGCATTTATTCAAGACAATATGTTCAAAGACACAAAACAAACTACTGTCTGTCACAAGAAAGGATGGAAGCCTACTAGAAGAGGTGCATATCAAGAGTGAACCCCTTTTTTCTGATGAGGCCTATGATGATGGAGTGGTTATTGATGGATCATACCCTGAAGATGAGAATGTGGGCTTTTCCAGTAAGCTCCAACCTGAAGGACCCCCAATCCTGGCTTCATTGGGACTCACACCGAGGAGTGATAAGAAATGTGTGGACCCACGAATGGATTGGCATCGAGTGCATGCAATACTGGATATGGTTCAAGACAACACTGTTATAGATTCACTGCAAACAGTTGAAGAGAGTGATATTTTGCACCTCTCCGATCATGAGTCAGATACAGAGACAGAGCTCCAGCCAAATCTAGATGATGCTTTCCTGAACTATAAGAATGGATAtgcttgtaaaaataaaaaaatcttatccAGGAATCCTAAAAAAGTCTGCTCTGAACCAAGAAAGGACAAAACTGCAAAAATTACGAAACGAAAAGTTGTTAAGCAATGTGATAAACCTAAGAGCGCTTGGCAGTTATTGTTCACTGATGATCTTCTTGATCTCATTGTTACTTCAACAAACGAGAATTTACTAAAACAAAACATGGGCTTCGAAGAATGCACCAATGTTGGGGAAATCAAAAATCTTATTGGAATATTGTACTTACAAGGCATAATGCGGCCAACTCATCAGAAATGCAGTGACCTCTGGGACAAGAAATACGGTCTGCCCTCCGTTATAAAAGCAATGTCACACAAACGCTTCAACTTTCTCATAAAAAACATCTGTTTCTATAGTCTGGAAGATGACAAAAGCATTCTGCAGTTCGATACCATGCAACGTATTCGCAAAGTATTCGAAATCTTCGCGTTGAACTGCAGAACAACCTTCGACGTAGATAGTACCGCCGTCGTGGATGAGATCATTGTCCCAGTTTATGGACCTTGCCCGTTTCGATACGAAATCGATAAGAAACCATTGAAACGTGGAATTAAAATAGTGTTGCTGGTCGACCCGAAAAATTTCTATGTGAGCAATTTGGATGTGATTACCGATCCATATTTCGAAGCTGGGGAGATTGTGAAAAAAATAACTCAACATTTGTATGGAACTGAGAAATCTATCATAATGGATAGCTGGTACTTTTCCTTTCAGTTGTTGGATACACTAAAGAGTTATCAGCTTTATACTATAGCGGGGTTGAACCCTAAGAGCGAGGTGATACCGCCAATGTTTCTGTCACAGCACAGGAAAAACTCTCCATACATTTCTGGATTCTTGGATGGTGAAGTCTCCCTGACGTCTCACGTAAACTCCCAGCTGAAAGTCACCAACGTTGTAACAAATAAGCCACAATTTTATCGGAAGTGTCTCACTGACCGCACAACATCTGTCGCCACGTATAAGAAGAATCAATCAGCAGTTGAAGTTCTGGATGTCCTAATGCATTATTATACGACATTACAATATACAAATGACTGGACACTTTCCTTGTTCTTTACATTGCTCAATATTGCGGCAGTCAATGCTCAGGTCATATGGAACTCACAAAATAAATGTGCCACTCCAAGGAGCTCGTTCATCAGAGATTTGGGATTGAATTTGTTAGAGGGTGATATAGTGCTCACTCGTAATTCTGCCTGCGAGCCGTATTGTAAGAAAAAGTTTGATGATTCATCACTGAGGGTTACAAAGTTTTTCAGCAAAAGACGAAGATGCCAAATATGTAGAATGTCTAAACCTAGACGAGACAGAAAGACTAAACAATACTGCTCCAAGTGCGAGCAGAACATTTGCAGGGAGCATTCTGTCCTTATATGCGGAGTGGAAAGTGAGAAAGACGAGGAGGAATACGAAGACGAGGTGAAGACTCCGACGCCGGTGAAAGTTCCGCACATGCCAGAAGTGTCCATCACCGTGATGCGACCCACCGGGGAGACGCTCCAATCACGCCAAGGTATCCAACAGATTGCTTCTAAGGACTGCCTCATATGCGGACGCTCTTACAGGTACTCGCACAACGCGAGACGTCACGAACTCACGTCACACAAATTTGACCgatacacaaacaaaataaacaataagaaatTACACTCGCACATGCAACTTAAACCTAAACTCAGGCCCAACCCGTTTAACCCGCAAGCGCGGCTCATACCTAATCCTATCAGTCATAAAATGCAATTGCTCCCTAAAATTATGCCAAGAATGATGACGCAAAAAATTATTACTCCACCTAAACCGATACCCATAAAATCTTCAAAGGCTGCGCATAATAATTTGCCGTATCCGTTACGCATCAAAGCTCTTAAAGACCTGCAAATTAAGAAGAAGGAACCGCAGATTCTAAAAACACTACTCACATCGAAACCTGAAGTTTTGGTGTCGGAACCGGAAATTATGAATTCTGGCCCGGAGAGCCCTGAAACGCTGATATCGGAACCCGAAATTGCGTCTTTTCAAGTAGAGGCAATTTTATCGGAGCCCAACGACTACGACGAAAACCAAGAGGAAGATGGGGACGCTGAAATGCATAACAATCTGAGTCAGAATTACGACACCGTCGATATGGACTCTGAAAATGAAATAGAAATAGCGCGACAGCAGGAGAATATCATTGACAATGACGAAAATCAAGATGAAGTTGACAATAATCAGCAAGACGACGGGACTGACTTTCAAGAAACTGAAAAAGTGGCAGAAAATGGCAGTGAGAAGGACAGTCCTCAAGATGTGGGGCTCGCTGAAGAAGATAACGGAAATATGGATGTTGATGAAAACTATGAAGCCAAAGACAATGAACGTGAAGAAGACGAAGAAGGAAATGAAGAAGTTGAGAATGAACTGGATGCTAGTCAGACTGAAGGCAACGAAGATGACGAGGAACCCCCGATTGGACTCGCACCGGAAGTAGAACTAAACGAAGACGTTCACAACAACTCCAACACATTCAACAGCGAAACGAATGACGACGAGGAACCGGATGAAAGTGCCGATCTTAATAATACTGCAGACGGTGAACCTAAAGAACTCGGCGCTGAGACAACATACGTCACTAACGAGCAAAGGAACTTCATCAAAAGATTTCGCGATATTATTCAACAGATCAACACGAAGAGATGTCTATGTTGTGACAAGGAGTATCCACGCAGAAAAGCTGTTATTCAACATCTACAGAAAAACGGGCACAAAGTTCCAAAACACACTTGCTACAATTGTGTCGTCACTTTCACGCATATTGGCGCTCTTCTTAGCCATATGAGACAAAACTCTTGCACCGATCTATGGAAGATCATCTACGACGAGAACGGCATCACTAGCGATATGATCGTTGAGGAGCCCAAGGGAGCCAAAATTCAAGCCAAAGATATTTTCAATGCAAAATCTTATGCGTGTAGATTGTGCCCGGCTAAATTCCAGCTGAAACAGTCTATTATGAAGCATGTGTCCGAGTTCCATGAAGATGGTCAGTCTTCAATTCCTCTCGGCTGTATCCATTGCGGAGCCACCTTTAAAGATAAATCCTTTCTTAAGAAACATACTCGCAACGGCGATTGTACAGTTTATATTCATTGTGATCTGTGTTCTGAACAATTCACAAACATGCAAGACTTTAATGATCATGCATTATCAGTTCACGCTCAGCACTTTGTCAAAACAGAAAACCAGAGCACCGATGGGCGACTCACAGATTGCTATCTTTGTGGCACAAAGACTAACAGCTATCCACATCTGCTTAAACATTTGAAAGCGGTGCATGATCAAGTCTCACAACACTGCCAATTTTGCGGCGTCAAGTTTGAACAACCTGTCGACCTAAACAAACACATGTACCTAGAACATCCTGGCCAGACTCCAGACATGCAGGCTCCGGAACCAGACATGTCACTCGTCAAAGAAGAAGCTGAGGAATACCATTATTCATGCACAGAGTGTAATGCAATTTTCGAAACTGTGGACGCGTGGACTGACCATCAAGTAGCTGAGCATAACCAAGTGGCGCACCATTGCGACCAGTGTGAAAAGAAATTTCTGAGACCCTCTGAGCTCGCAGAGCACAAAAATACTCACCTAAGAGTCAAGTTCTATCCTTGCAACTTTTGCTCTAATTCGTATAGCACCCCGCAGAAGTTGTCTGATCATATCCTTAACATTCATCCTAATGCTCAGCCCACGGACAATGAATTTTTCTGCGACATTTGTATTAGAGCTTTCAAAAGTCGTCAGGCTTACTCGAATCATATGCGTATCCATGCTAAAGTGCCAACGACCAACAGAAAACCCGGTGAACCGAAAGGGTTTGACCCACGTATCATTGGTAAACCCATCAAGCAGTTCACTATATCCAACGTGGTTCCACCTGGTTTTATCAATTTCAAGCCAAGTGCTAATGTTCCTAATGCTCCTTATTCATGTGATATTTGCGGTAAAGGCTTCATGCATAAGAAAAATATATGGAAGCACAAAAAAGTACTTCATGCTGATATTGTAAACGATCGAAACGATAGCGAAGAGAACACAATGCACGCCTCCACCGAAGAAGATGAATACAATGTTGATGAAAACGGAGCAGCACTTTCAACTCCACAATTCAATAGTTTCAATTTTGCAAATTTTACTAATAACGCAGTTCAGTCCCAAGCCGATCCTATACCTTTCTCGTGCGAACTATGTTCTAAGCGGTTCCCGCTCAGAACCAGTCTGATTAAGCACAAACGCGCTAAGCATGGAATTACTAATGCCAACCCCGCCGGCAACGTCGAGAGCCAGGCGCAAGCGACTCCTACTGAAGGCCAAAGTGGTGGTCGATCAAGCTGTACTATTTGCAAAATTACGTTCGCAGACAAAAAATCTTACTACCGTCACAGAAAGAATGTGCACAAATCAGCGACTCAAATGTGCAAGATTTGTGGCAAGCCTCTGAATTCCACGCAGGAACTGTACGAACATCTGAAGGCAGCTCACGCCAGAGAGTTGCTAGGGTACAACGCTAATCAAAGTACGAGTAAAGCTCAGGATTTATCACAAGAAATGGATGGCGAATTCGAAAACGATCTAGAATCAGCTGATCCTAGTTCTGATTACCAAGCACGGTATCCGTGCGAAACTTGTGGCAAACAGTTTGTGGGATTGCTCTCGTTGCAAAATCACCAGTGTATAAATCAAGCACCTTCGCAACCCCAGACATTCGACTGTGAAATCTGTCACAAAAGCTACACCTCCATCGCCGCATTAAAAAGTCATCGTGGCTGGCATCTGCGCTCGCCCGATGGCAAGGCGGCCGCTAACAACAGCGGTCTTTGGATGCCTCAACACAAAGTAACCAGCAAGGTCAGCAAACATGAGGTGGTAGAATCTGGCGCGCCTGCTCCGTCGACATCGTCAGTTGTGACTCGACTCCATTCGACTCCCGCGGCCGCGGCCAAACGGAGACTGCCTCCCGAAGTAGAAGTTACCGTAGTGAACCCAAACAAAAAGATGCGCTCGGACGATTCGGTCGAGATGGATCAGCAGAACGATGGCTCCGAAGGTAGGTACTGTACGATATGCGAGAAAGATTTTACGAAACGCGCCGCCTACCAACGCCACATGGACGAGGTCCATCAACCGAATTCAGTTTTCTGTCCGGTCTGTGATAAGAGTTTTACGAGGAAATCAACATTGATCGTGCACATGAGAAAGCACTACGGAGGAGATGGAGAGGGTAGTTCATCGACAGCTCAGGTGGAAGAGGATGAAGGTTTTGCTTGTGATCTCTGTGGCGCGCAGTACGACACTGAGAATGCTTTGAGGGCGCACCGGATCAGACATCACGGGGAGGAATCTGGGGATTCGGAGGATGATGGCCAAGTGCTGATCGCACAGCCTGGGGAGTTCACGTGTGGTCAGTGCGGCGACGGTGTCGCTACTGCGCGGGATCTGATCACACATCGCGCGATACATTCAACACCCACTAAATTCTTCTGCAACATTTGCAAAGTGTACTTCGTGAGAGCACTCGATTTGTCCTCGCACACACGAGCGCGGCACGCTGACAACGAGAAAGTGTTCTTCCCGTGCGCCATGTGTGATCGCTTCTACATGAACAAGAAGAGCTTGCAACGTCACATTGACATGGCCCACTGA
Protein Sequence: MTVNYDRVCRLCLSSRGELLPIFPTTSSDDMEPPILASKIKDCVSVEINENDDLPTTVCRKCVDNVNNWHLFKTICSKTQNKLLSVTRKDGSLLEEVHIKSEPLFSDEAYDDGVVIDGSYPEDENVGFSSKLQPEGPPILASLGLTPRSDKKCVDPRMDWHRVHAILDMVQDNTVIDSLQTVEESDILHLSDHESDTETELQPNLDDAFLNYKNGYACKNKKILSRNPKKVCSEPRKDKTAKITKRKVVKQCDKPKSAWQLLFTDDLLDLIVTSTNENLLKQNMGFEECTNVGEIKNLIGILYLQGIMRPTHQKCSDLWDKKYGLPSVIKAMSHKRFNFLIKNICFYSLEDDKSILQFDTMQRIRKVFEIFALNCRTTFDVDSTAVVDEIIVPVYGPCPFRYEIDKKPLKRGIKIVLLVDPKNFYVSNLDVITDPYFEAGEIVKKITQHLYGTEKSIIMDSWYFSFQLLDTLKSYQLYTIAGLNPKSEVIPPMFLSQHRKNSPYISGFLDGEVSLTSHVNSQLKVTNVVTNKPQFYRKCLTDRTTSVATYKKNQSAVEVLDVLMHYYTTLQYTNDWTLSLFFTLLNIAAVNAQVIWNSQNKCATPRSSFIRDLGLNLLEGDIVLTRNSACEPYCKKKFDDSSLRVTKFFSKRRRCQICRMSKPRRDRKTKQYCSKCEQNICREHSVLICGVESEKDEEEYEDEVKTPTPVKVPHMPEVSITVMRPTGETLQSRQGIQQIASKDCLICGRSYRYSHNARRHELTSHKFDRYTNKINNKKLHSHMQLKPKLRPNPFNPQARLIPNPISHKMQLLPKIMPRMMTQKIITPPKPIPIKSSKAAHNNLPYPLRIKALKDLQIKKKEPQILKTLLTSKPEVLVSEPEIMNSGPESPETLISEPEIASFQVEAILSEPNDYDENQEEDGDAEMHNNLSQNYDTVDMDSENEIEIARQQENIIDNDENQDEVDNNQQDDGTDFQETEKVAENGSEKDSPQDVGLAEEDNGNMDVDENYEAKDNEREEDEEGNEEVENELDASQTEGNEDDEEPPIGLAPEVELNEDVHNNSNTFNSETNDDEEPDESADLNNTADGEPKELGAETTYVTNEQRNFIKRFRDIIQQINTKRCLCCDKEYPRRKAVIQHLQKNGHKVPKHTCYNCVVTFTHIGALLSHMRQNSCTDLWKIIYDENGITSDMIVEEPKGAKIQAKDIFNAKSYACRLCPAKFQLKQSIMKHVSEFHEDGQSSIPLGCIHCGATFKDKSFLKKHTRNGDCTVYIHCDLCSEQFTNMQDFNDHALSVHAQHFVKTENQSTDGRLTDCYLCGTKTNSYPHLLKHLKAVHDQVSQHCQFCGVKFEQPVDLNKHMYLEHPGQTPDMQAPEPDMSLVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCNFCSNSYSTPQKLSDHILNIHPNAQPTDNEFFCDICIRAFKSRQAYSNHMRIHAKVPTTNRKPGEPKGFDPRIIGKPIKQFTISNVVPPGFINFKPSANVPNAPYSCDICGKGFMHKKNIWKHKKVLHADIVNDRNDSEENTMHASTEEDEYNVDENGAALSTPQFNSFNFANFTNNAVQSQADPIPFSCELCSKRFPLRTSLIKHKRAKHGITNANPAGNVESQAQATPTEGQSGGRSSCTICKITFADKKSYYRHRKNVHKSATQMCKICGKPLNSTQELYEHLKAAHARELLGYNANQSTSKAQDLSQEMDGEFENDLESADPSSDYQARYPCETCGKQFVGLLSLQNHQCINQAPSQPQTFDCEICHKSYTSIAALKSHRGWHLRSPDGKAAANNSGLWMPQHKVTSKVSKHEVVESGAPAPSTSSVVTRLHSTPAAAAKRRLPPEVEVTVVNPNKKMRSDDSVEMDQQNDGSEGRYCTICEKDFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLIVHMRKHYGGDGEGSSSTAQVEEDEGFACDLCGAQYDTENALRAHRIRHHGEESGDSEDDGQVLIAQPGEFTCGQCGDGVATARDLITHRAIHSTPTKFFCNICKVYFVRALDLSSHTRARHADNEKVFFPCAMCDRFYMNKKSLQRHIDMAH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00663313;
90% Identity: -
80% Identity: -