Prub012470.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Plemyria rubiginata
Gene Symbol
-
Assembly
GCA_963576535.1
Location
OY754918.1:8661601-8683896[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.0001 0.0065 17.3 1.5 1 23 409 431 409 431 0.96
2 20 0.00032 0.021 15.7 1.0 1 20 437 456 437 459 0.94
3 20 0.0012 0.078 14.0 4.6 1 23 478 500 478 500 0.97
4 20 2.2e-05 0.0015 19.4 3.9 1 23 506 528 506 528 0.99
5 20 4.3e-05 0.0028 18.5 5.3 1 23 534 556 534 556 0.97
6 20 1.1e-05 0.0007 20.4 8.3 1 23 562 584 562 584 0.97
7 20 2.1e-06 0.00013 22.6 2.8 1 23 590 612 590 612 0.98
8 20 0.00012 0.0076 17.1 6.7 1 23 618 640 618 640 0.97
9 20 2.3e-05 0.0015 19.4 6.4 1 23 646 668 646 668 0.98
10 20 5.6e-07 3.7e-05 24.4 1.9 1 23 674 696 674 696 0.98
11 20 1.1e-05 0.00072 20.3 7.7 1 23 702 724 702 724 0.98
12 20 0.00015 0.0098 16.8 6.8 1 23 730 752 730 752 0.97
13 20 5.2e-05 0.0034 18.2 7.3 1 23 758 780 758 780 0.98
14 20 7.8e-06 0.00051 20.8 6.7 1 23 786 808 786 808 0.97
15 20 1.3e-05 0.00082 20.2 5.2 1 23 814 836 814 836 0.98
16 20 2.7e-06 0.00018 22.3 3.8 2 23 843 864 842 864 0.98
17 20 1.9e-05 0.0013 19.6 8.0 1 23 870 892 870 892 0.97
18 20 3.5e-06 0.00023 21.9 6.5 1 23 898 920 898 920 0.98
19 20 0.00052 0.034 15.1 0.3 1 23 927 949 927 949 0.97
20 20 0.036 2.3 9.3 6.0 1 23 959 981 959 981 0.99

Sequence Information

Coding Sequence
ATGAATCAAGATCACCACAATATCAATGCGGGTGGAGGCCAGCCTCCTGGGAATTCAGAGTCCCAGAATCAGAGAGTACAGAATCAACAGCAGCAAGTGAGTCTGCCTGCTACCACGTCAGCCACTGACCTACGAGTCAATTCGGCAGCTGTGAACGTTGCATTGTCAAGTGTAGCTAAGTACTGGGTGTTTACGAATTTATTCCCGGGACCGATTCCTCAAGTCTCAGTATATGGGCTTCCAACTGGAACCAGAATTGAAAATGGAAAAGCAGTGCAGgaCCTTGGACAAGCGCATGCTAGCATTCTCAATGGTGACCCAAACATTATCCTGGGTCACCATAGTGTGCAGCCACAGGTCACAGTGTCGGCTGCCCAACAGATCCCGGTTTCACAGATTATTGCCACACAGTCTGGCCAAGCACATGAAGCATTGGTGGCACATAGCCAGCAGGACCTCCAACAGGCATCCAACCAGGTCCAGGTCACTACCTCGCATCACCAGGTACCCAATAACCGGGTCGAATTTGTCCAACACCATAGCATTGATATGGGTCATCATGTACAACAGCAGCATATAATGCAGCAACAGTTGATGGCAGCAACGCGACCTGACCACTCAAATCAACAGatCCAACTGACAGTTAGTGAAGATGGAATTGTGACAGTAGTAGAGCCCGGCAGTAGTAAAATAGTCGAGAAAGAAGATCTGCATGAGGCCATCAAGATCCCGGAGAATAATATCACAGTGCAACAGTTGCAGCAGATTGTTGGACAGCAAGTGCTAGACAGCGTGGTTCGCATCGAACAGGCGACGGGCGAGCCTGCTAACATTGTGGTCACGCACAACGCAGACGGCACTACGTCCATAGAGGCGAGCGCGGCCGACCCTCTTGCTATTGTCAAAGATGAGAAGGGCAAGCACGAGACACCGCAGTTCACTATACCTGCCGAGATCAAAGAGATGAAGGGCATAGATTTGAAGAATGTAAACACGATGAACATGGAGGGAGCAGTGGTCAAGATATCAACGAACGCGGCAGACCACGACCTCCATGCTATGTACAAAGTCAATGTGGAGGATTTATCGCAGCTGTTGGCATACCATGAAGTTTTCGGCAAAATGGGCCCAGATGGGCAGCCGCAGTCTAAAGTTGCCGATGTAGAAATAGAGGTGCCAGGAACAAGCTCCGGAATGTCAGAAGCAGAGTCCTCGCCCGGTCATCACGCTTGTGATATTTGCGGGAAAATATTCCAGTTCCGGTACCAGCTTATAGTCCACAGACGTTACCACGGCGAGACCAAGCCTTTCACTTGCCAAGTATGCGGCACGTCGTTTGCGAATCCCGTCGAACTATCACGTCACGGAAAATGTCATCTTGCCGGCGATCCCGCTGAAAGACATGCCAAGAGAATGGCTCAAGACAAACCTTATGCATGCGCCACTTGCCATAAAACGTTTTTGCGTAAGGAGCATCTAAACAACCATGTACGCAGTCACACAGGCGAAACTCCATACAGATGCGAGTATTGCGCCAAAACGTTCACCCGCAAGGAGCACATGGTGAATCACGTGCGGAAACACACGGGCGAGACGCCGCATCGCTGCGACATCTGCAAGAAAAGCTTCACGCGGAAGGAACACTTTATGAACCATGTTATGTGGCATACAGGTGAAACGCCGCATCATTGTACCGTTTGTGGAAAGAAGTATACTAGAAAGGAGCATTTGACAAATCATATGAGATCGCACACGAACGATACTCCATTCCGGTGCGATCTATGCGGGAAATCCTTCACCAGAAAAGAACATTACAGCAATCACATTATGTGGCATACTGGCGAGACTCCCCACCGGTGTGACTTCTGCTCAAAAACTTTTACACGTAAGGAGCATTTACTGAACCATGTGAGGCAACACACGGGCGAATCTCCCCATCGCTGCAACTACTGTTCCAAGTCGTTCACGCGGCGCGAACACCTGGTCAACCATGTGCGACAACATACCGGTGAAACGCCCTTCCAATGTGGCTACTGCCCTAAGGCGTTTACGAGGAAAGACCACTTGGTGAATCACGTGCGGCAACACACGGGCGAGTCCCCGCACAAGTGCTCGTACTGCACGAAATCGTTCACTCGCAAGGAGCACCTGACGAACCACGTGCGCCAACACACGGGCGAGTCGCCGCACCGATGCACCTTCTGCGCCAAGTCTTTCACGAGGAAGGAGCATCTCACCAACCATGTTAGACAGCATACGGGCGAAACGCCACACAAGTGCACGTATTGCACGCGCGAGTTCTCGAGAAAGGAGCATCTGAACAGCCATCTGCGGCAACACACGGGGGTCACTCCGCATTCCTGCTCCTACTGTAACAAGACCTTTACGAGGAAGGAGCATCTCGTCAATCACGTGCGGAAACACACCGGCGAAACTCCGTTCAAGTGCACGTTCTGTTCGAAGTCATTCTCCCGCAAGGAGCATCTCACGAATCACGTGAACCTGCACACTGGCGAGACTCCGAACAAATGCCCATTCTGCACTAAAACCTTCTCTAGGAAGGAACATCTTACCAACCATGTCAGAATACACACGGGTGAATCGCCGCATCGCTGCGAATTCTGTCAGAAAACTTTTACGCGAAAAGAACACCTCACAAATCACATGAAACAACATACTGGGGACACGGCTCACACGTGCAAAGTTTGCCAGAAACCTTTCACCAGAAAAGAGCATTTACAAACACACATGAGGTATCATAGTTGCGGTGAGCGCCCGTTCAGTTGTGGTGAATGCGGCAAATCATTCCCGTTAAAGGGAAATCTCATGTTTCACGAGAGGTCCCATAATAAAACCGGAGGTGGCTCcaagccgttccggtgtgataTCTGTTCTAAGGACTTTATGTGTAAAGGGCATTTACTAACCCATCGAAGGACACACGCGATTGAGGAAACCTCTGCCGAGGCACagactgaaactgaaacagattgTCTGACTGTGACCACAGACTGCACTAACAAATGCATCAAGGTGGAGCTTGAGACTGTTGAAAGGACTGAGCAAAGattgTCGGTAGAAAATGGACCAACTGAAAACAATGTAGTTGTGCAGCCCGCGCTTAGCGATACTACAAACCACATTGTGACCCAAAGTCAAAATACTGTGATGCAGATAAGCAGCCAAcaGGTGCGTGTTCCCTCCTCTAGCCCGGGAGGCAATGTTACGACCGACACATTCACCCACACGGTGTCAACGCAACACCACGCGGGCACAACTATCTCTCACCATCCTGTGACTGTTAACTACTAG
Protein Sequence
MNQDHHNINAGGGQPPGNSESQNQRVQNQQQQVSLPATTSATDLRVNSAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPTGTRIENGKAVQDLGQAHASILNGDPNIILGHHSVQPQVTVSAAQQIPVSQIIATQSGQAHEALVAHSQQDLQQASNQVQVTTSHHQVPNNRVEFVQHHSIDMGHHVQQQHIMQQQLMAATRPDHSNQQIQLTVSEDGIVTVVEPGSSKIVEKEDLHEAIKIPENNITVQQLQQIVGQQVLDSVVRIEQATGEPANIVVTHNADGTTSIEASAADPLAIVKDEKGKHETPQFTIPAEIKEMKGIDLKNVNTMNMEGAVVKISTNAADHDLHAMYKVNVEDLSQLLAYHEVFGKMGPDGQPQSKVADVEIEVPGTSSGMSEAESSPGHHACDICGKIFQFRYQLIVHRRYHGETKPFTCQVCGTSFANPVELSRHGKCHLAGDPAERHAKRMAQDKPYACATCHKTFLRKEHLNNHVRSHTGETPYRCEYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCTVCGKKYTRKEHLTNHMRSHTNDTPFRCDLCGKSFTRKEHYSNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNYCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSYCTKSFTRKEHLTNHVRQHTGESPHRCTFCAKSFTRKEHLTNHVRQHTGETPHKCTYCTREFSRKEHLNSHLRQHTGVTPHSCSYCNKTFTRKEHLVNHVRKHTGETPFKCTFCSKSFSRKEHLTNHVNLHTGETPNKCPFCTKTFSRKEHLTNHVRIHTGESPHRCEFCQKTFTRKEHLTNHMKQHTGDTAHTCKVCQKPFTRKEHLQTHMRYHSCGERPFSCGECGKSFPLKGNLMFHERSHNKTGGGSKPFRCDICSKDFMCKGHLLTHRRTHAIEETSAEAQTETETDCLTVTTDCTNKCIKVELETVERTEQRLSVENGPTENNVVVQPALSDTTNHIVTQSQNTVMQISSQQVRVPSSSPGGNVTTDTFTHTVSTQHHAGTTISHHPVTVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00704247;
90% Identity
iTF_00686548;
80% Identity
-