Prub004677.2
Basic Information
- Insect
- Plemyria rubiginata
- Gene Symbol
- Lrrfip2_1
- Assembly
- GCA_963576535.1
- Location
- OY754909.1:1484641-1495695[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.2e-70 1.5e-66 225.2 17.9 1 268 117 374 117 398 0.86 2 3 2 2.5e+04 -9.8 14.5 2 224 395 447 387 480 0.37 3 3 0.037 4.7e+02 0.3 7.2 209 269 544 602 523 621 0.54
Sequence Information
- Coding Sequence
- ATGGGGCATCGTTCAGAAATGACTACTCCTGATAACAGTGACGAGGAGAGTGGAAATGCCTTTACCGACGGTGACTTTGAGGACTCTGATGGAGAAGCCGCTCTGGAATGCAATGGTAACAACATATCTGTCAACGAAACAATTAATGAAGAAGTTCAAAAGAAGCTCACCAACGGCAATTCTAGTAATGGTTTTAAGGAGCCTCCCGAAGAGCTAAAAGTTAACGGACGTGAATACCAATCAAGTGATGTGGAAAATTGCAGTGGCATAGCAGCAGATGTAAAACGTGATTCACACGGTGATCAAAACCCTTCGATTGTCGGAATTATTGGAGATCAGCACAGTCATGCAGAACAGCGCCTGGCTGCGCGGCGTGCGGCGCGGGCCGAGGCCAGAGAAATCCGCATGAGAGAGCTGGAGAGACAGCAAAGAGAGCAGGAGGACCATGCGGACAAGGCGTATGACATGTACGCAGAGACAGTCGGCAGACGCGGCCCCCGGCTGGCGGCCCTCAGTCCGGCCGCGGTGCTGTCGCCGCGCCGGAGTTCAGAGGATTCTGCGGATGACACCTTTAGCATCAAAGACTTGAGGCATGAACTGAAAGAAGTTGAAGAGAAGTTCCGCAAAGCGATGATTCTGAACGCGCAGTTAGACAACGACAAAGCGTCGCTCGGCTATCAGCTGGAACTGCTCAAGGACAGGATCGATGAACTGCAAGAGGAATACGCGCAACTACAGCGCGAGCACCGCGAGAAGTGCTCGGCGCACGAGCGGCTGCGGCGCGAGCACGCGGGCGTGCAGCGCGAGGTGGCGGAGGCGCGGGCGGCGGTGCGCGCGCgggacgccgccgccgccgccgccggccgcgtGTTCGCGGACGCGCCCGCCGGCGCCAGCGTGCCCGGCGTGGGGCCCGTGCCGCCGCTCGTGCTGCTCGCGCTCGAGACGGACCAGCTGCTCGGCGAGCCGGACGCCACGCTGGACGTGCGGTTGCAAAATCTGGTGTCGTCGAAGCTGTCCCTGGAATCGGAAGTGCGCAAACTGAAGCTGACGCTCAACGAAGAACGCGCCGCGAGACAAAACGGCGTCGCCAACCATCACGACGACCAGTACGAGAGTGAATTGGAGAGTGCGCGCAAGGCGAGCGTGGAGGCGAAGGGACGCGCGGCGCgcgcggaggcggaggcggcgcTGCAGGCGGCGGGCTGCGCGCGGCTGGAGGCGCAGCTGCAGCGCCTGCGCGCGCGGCACAGCGAGCGCGACGACGAGGAGGAGCTGCTCAAGCAGGAGCGCAGGAAGCTGCAGCGGGAGGCGGCGGGCTGCGCGCGGCTGGAGGCGCAGCTGCAGCGCCTGCGCGCGCGGCACAGCGAGCGCGACGACGAGGAGGAGCTGCTCAAGCAGGAGCGCAGGAAGCTGCAGCGGGAGGTACGTACTGCTAGCCTGCTACTgcgcggaggcggaggcggaggcggaggcggcgcTGCAGGCGGCGGGCTGCGCGCGGCTGGAGGCGCAGCTGCAGCGCCTGCGCGCGCGGCACAGCGAGCGCGACGACGAGGAGGAGCTGCTCAAGCAGGAGCGCAGGAAGCTGCAGCGGGAGCCTGCTACTgcgcggaggcggaggcggaggcggaggcggcgcTGCAGGCGGCGGGCTGCGCGCGGCTGGAGGCGCAGCTGCAGCGCCTGCGCGCGCGGCACAGCGAGCGCGACGACGAGGAGGAGCTGCTCAAGCAGGAGCGCAGGAAGCTGCAGCGGGAGgCGCGAGAAGCTCAGAATCGCGTGGAAGAATTGGAGACAGAAAACAGCCACCTCACCAAAAGACTCGACAAACTGAAGAACGCAAAATCTGCACTGCTCAAGGACCTGTGA
- Protein Sequence
- MGHRSEMTTPDNSDEESGNAFTDGDFEDSDGEAALECNGNNISVNETINEEVQKKLTNGNSSNGFKEPPEELKVNGREYQSSDVENCSGIAADVKRDSHGDQNPSIVGIIGDQHSHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRGPRLAALSPAAVLSPRRSSEDSADDTFSIKDLRHELKEVEEKFRKAMILNAQLDNDKASLGYQLELLKDRIDELQEEYAQLQREHREKCSAHERLRREHAGVQREVAEARAAVRARDAAAAAAGRVFADAPAGASVPGVGPVPPLVLLALETDQLLGEPDATLDVRLQNLVSSKLSLESEVRKLKLTLNEERAARQNGVANHHDDQYESELESARKASVEAKGRAARAEAEAALQAAGCARLEAQLQRLRARHSERDDEEELLKQERRKLQREAAGCARLEAQLQRLRARHSERDDEEELLKQERRKLQREVRTASLLLRGGGGGGGGGAAGGGLRAAGGAAAAPARAAQRARRRGGAAQAGAQEAAAGACYCAEAEAEAEAALQAAGCARLEAQLQRLRARHSERDDEEELLKQERRKLQREAREAQNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -