Prub016612.1
Basic Information
- Insect
- Plemyria rubiginata
- Gene Symbol
- retn
- Assembly
- GCA_963576535.1
- Location
- OY754924.1:4112697-4119638[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.4e-20 2.7e-16 60.2 0.0 17 89 20 90 12 90 0.94 2 2 8.8 2.5e+04 -3.8 0.0 25 38 224 237 211 238 0.73
Sequence Information
- Coding Sequence
- ATGGCTTCTCAAAATGCACGAGTTTCTTCATTCTCTAATAGAATATTCGTTGTTCCAGGAACCCCAATAAACCGGCTGCCGATAATGGCCAAGTCAGTGCTGGACCTGTACGAGCTGTACAACCTGGTGATCGCGCGCGGTGGTCTGGTGGAGGTGATCAACAAGAAGCTGTGGCAGGAGATCATCAAGGGACTCCGGCTACCGTCTTCCATCACGTCTGCGGCCTTCACCTTGCGCACACAATACATGAAATATCTCTACGATTATGAATGTGAGAAGAAGAACTTGTCTACCAGAAGCGAGTTGGACGCCGCCATCGAAGGCAACAAGCGAGAAGGAAGGCGCGCGTCGGGTCAATACGACGCTCAAGCAGCTCTTGGCATGCCGCCCCTCAACCGCGGGGTCCCCGCGTCTCTCGCGCAGCTCTCCCAGCACATGCAGCCTCTGTCCCTCTCGCTGGGAGGGGGGGTCGCGGGGGTGCCCCGCCTGCCCCCCTTACCGCCGCATGCGCCGCACATATCCCAGCACGACATCGAGTACAGAGTGAGGGAGTACATGAAGATGATACAGACGCAACGCGACCTGATGAGAAATGGTTCAGAATCGCCGCCCAGCGTCACCAACGGCCCAGCGTCTATGATGTCACCGCGTGACGCGGCCGCTCTGAGCGCCATCGACGTGTCCCGCCTCACTCTCTGGTCGCTCtacaacaataacaataacaacaGTCCAGCGCCGGACCTGGAGCCACAACGCGAGGCTCTAAACCTCAGTGAGAGTCCGAACTCCAGCATGAGTGGCGGTAAGCGCGAGGCTTGCCGCTCCCCCCCTCCACCGGCCAAGCGCCGCACCCCCCGACCCCCATCTCCACGGCTACCCTCTCCCCCGAGACAGGCCTGCGCGCCCGCACCCGCCCAGCTGAATGGGGGAGCCACTAATGGAACCAATGGAGCAGCCTTCAAAATTACCACCAGAGgtgatgccAATACGGGAGACCAGCAACTCGTCGTGTCAATAGAACTGAACGGTGTCACATACGAAGGTGTCCTGTTTCCCTCACAGAATGGCAACGGACAGAACGGGCACAGGCAAATGGTCTCTTAA
- Protein Sequence
- MASQNARVSSFSNRIFVVPGTPINRLPIMAKSVLDLYELYNLVIARGGLVEVINKKLWQEIIKGLRLPSSITSAAFTLRTQYMKYLYDYECEKKNLSTRSELDAAIEGNKREGRRASGQYDAQAALGMPPLNRGVPASLAQLSQHMQPLSLSLGGGVAGVPRLPPLPPHAPHISQHDIEYRVREYMKMIQTQRDLMRNGSESPPSVTNGPASMMSPRDAAALSAIDVSRLTLWSLYNNNNNNSPAPDLEPQREALNLSESPNSSMSGGKREACRSPPPPAKRRTPRPPSPRLPSPPRQACAPAPAQLNGGATNGTNGAAFKITTRGDANTGDQQLVVSIELNGVTYEGVLFPSQNGNGQNGHRQMVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00632547;
- 90% Identity
- iTF_00638435;
- 80% Identity
- -