Basic Information

Insect: Pleistodontes nigriventris
Gene Symbol: -
Assembly: GCA_903653215.1
Location: CAHLDJ010006232.1:9548-13045[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 8.3e-05 0.027 16.8 0.9 1 23 258 280 258 280 0.97

2 11 0.025 8.1 8.9 0.1 1 23 288 311 288 311 0.96

3 11 4 1.3e+03 2.0 6.9 1 23 359 381 359 381 0.98

4 11 4.1e-05 0.013 17.7 0.4 2 23 498 519 497 519 0.97

5 11 1.7e-05 0.0054 18.9 2.7 1 23 524 547 524 547 0.96

6 11 1.7e-05 0.0055 18.9 0.1 1 23 580 602 580 602 0.98

7 11 6.1e-07 0.00019 23.5 0.8 1 23 612 634 612 634 0.96

8 11 2.2e-06 0.00072 21.7 1.2 1 23 640 662 640 662 0.99

9 11 1.1e-05 0.0036 19.5 0.2 1 23 668 690 668 690 0.98

10 11 5.8e-06 0.0019 20.4 2.6 1 23 696 718 696 718 0.98

11 11 0.00044 0.14 14.5 0.3 1 21 724 744 724 745 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	8.3e-05	0.027	16.8	0.9	1	23	258	280	258	280	0.97
2	11	0.025	8.1	8.9	0.1	1	23	288	311	288	311	0.96
3	11	4	1.3e+03	2.0	6.9	1	23	359	381	359	381	0.98
4	11	4.1e-05	0.013	17.7	0.4	2	23	498	519	497	519	0.97
5	11	1.7e-05	0.0054	18.9	2.7	1	23	524	547	524	547	0.96
6	11	1.7e-05	0.0055	18.9	0.1	1	23	580	602	580	602	0.98
7	11	6.1e-07	0.00019	23.5	0.8	1	23	612	634	612	634	0.96
8	11	2.2e-06	0.00072	21.7	1.2	1	23	640	662	640	662	0.99
9	11	1.1e-05	0.0036	19.5	0.2	1	23	668	690	668	690	0.98
10	11	5.8e-06	0.0019	20.4	2.6	1	23	696	718	696	718	0.98
11	11	0.00044	0.14	14.5	0.3	1	21	724	744	724	745	0.94

Sequence Information

Coding Sequence: ATGGAGGAGGTGAAGATCTACGGGGGCCGGACCAACGGCGTCCACGACGGGGACGCGCTGCTGGTGGACGTGGAGACGTGCCGGTTGTGCGTGAAGAGGTGCGGCCTCGGGACGCAGCAGTGGGGCCTCTTCGAGAACGACCTGCCGCAGAAGCTCATGGCATTCGCGGCCGTACAGaTTCAAAAAAATGATGGATTACCATCTGTGATCTGCACAAATTGTCGAAATTTAGTCTGCATGTCTTACAATTTCAAATGTCAAGTGGAAAGAAGCGATCATGATCTTCGCCAAGCTCTTCTCATACGACAATCGATGGCACATTGGCCTACGGTGCCAATTGCAAAACctgttgaaaatattagtaCGCTAGAAAGTATGGTAccttgtttacaaaaaaatatcaataactcTTGTATGTCGGTTCAACACGAACATAGTGAAAATAATCacgaacaatttatttttgatattgccaatagttgtaatatagaaaatgaaacATGTAAAAAGGAAGTTCAAATGGAATCAAATAACTCAGTTGAAACAGGGAATGTAGCAGAAAATAGTAATACTAtagcttttgaaataaatagagCGATATCAGAAAATGATAACAACAGGGAAAATGCTCTTATGACTTTTGAGACACAATacgaaatgaaaaatgaattaattaccAAAAATGATTCTGAAAAATCGCAGTCTAAAGAGATTCATGAAAATTCTAATCAGAGTGATGATGAAAAGCCTTTAATATTACGAACAAAACgacataaatgtaattattgtataaaatcattTGCTAGTCTGTCCTTATTGGAAAAACATATAGTGATTCATAAGAAGCACCttgaaatagtttatatttgcTACATATGTGACGAGCAATTTTCTGCGGTCGATAAAGTTAAAAACCACGCAATGACAATTCATGGTGTAAATatggagaaagaaaaaataatagaaaatactaaaatgcgACGAATAACTGGGTGGGTTAAAAAAATTGACGATGATAGTTACGAACAAAATACTTTAGCAGTAGACAAAACaggagagaaaaaaaatactaaattcgaatgtaaattttgttgtaGACAATTTACTTATCACAAGCCTTTTATGGCTCACATTACAACACATCCAGATTAtaacgataaattattaaatgaattaagtaaGGGTCCAGTAGATTCAGAGGTGTCGCCTGAAACgaacataaaaattacttctCATTCGCAAAACATAGAGGCTGCTCCTTCCGATCAAGTAAATACAGATATTAATTCtcatacagaaaatttaaaagccaTTTCTTATCCAATAAACGAAGAGCTTTCTTCGCAAGCAGCAAATTTAGAAATCACTcctcaagaaaataaatgtaaagatgAAGATATGTCTTATAGAGATGACACAGATGAGTCTGAAGATGATgacgaagatgatgatggtcaCCGTGAAGATGATGATATGCCTGCAGCAAGTATACAATGCAATCAATGTGGAAAACTTGTTGCAACTTTAAGAAATCTTAAGAGGCACCTCTTAACTCATTCCGGCCTTAAACATAAATGCTCGATATGTAGTAAAGATTTTTCGAGACCTGATAAACTTCGAGAGCATCAACAATTAAAACATAAGGAAGAGCTGTTTGGTAAATCTGATACAGATAACGAATCATCGGATGATAATAACGTATCAACTAGTCGAAAAAAGGACAAAAGTAATCGACCTTACAAATGTTCGCTGTGTCCTAAAGCATTTGCTCAACCTCAATCGCTGGCGAATCACGAAGAAAGACACAAACGCGTTCGCGATGTACAAAAGCGCTACTTGTGCGAAGTCTGTAGTAAATGCTTTGCTCAAAGTGGATCGTTGGTAGCTCACATGCGTACCCACACGGGTGTAAAGCCGTACGTCTGCAACGTTTGCAGCAGAGCTTTCACCAAAAGCACGTACCTGCAGCTCCACCTGAGAACGCACAGCGGGGAAAAGCCGTACATTTGCCAATACTGTAGCAGAGCCTTCGCTCGAGCAAATACGTTGGCTCGACATATAACTATGCACACGGGAGAAGCCAAGTATCAATGCCAAATCTGCACAAAGTCCTTTAGGCGACTAACATCCTTGAACGAgcacacgtacacacacacGGGTCAAAGACCTTACGCTTGTAAGATTTGCTCCAAGAGGTATAACAATGCTGGATCATTGTACGCTCACACAAAGAAATGCAAAGCTATGCAAGCTGCTGCAAATCAAACAACCTATCCGGTTTCTATACATCCTAACGATAATGGTATAGTACCGCAAAGTGATAATAATACTGCACCACAGCTCCTGATTTTTACCGAGAAGAAAATCGACGAGATGATTACGGATGAGACAATAACGGCCGAATCCCCGACATGCCAATTTATGATTGCGAATGTACATGGTCAGAAACCGATGCCACCTAATATGCTTGAGCCGTATACGATTCAAGAACCCGATGTTTATAACATGAACTCAAAACAATTTAAGACACCGTACTATGGATTGTATCAAAATATGTga
Protein Sequence: MEEVKIYGGRTNGVHDGDALLVDVETCRLCVKRCGLGTQQWGLFENDLPQKLMAFAAVQIQKNDGLPSVICTNCRNLVCMSYNFKCQVERSDHDLRQALLIRQSMAHWPTVPIAKPVENISTLESMVPCLQKNINNSCMSVQHEHSENNHEQFIFDIANSCNIENETCKKEVQMESNNSVETGNVAENSNTIAFEINRAISENDNNRENALMTFETQYEMKNELITKNDSEKSQSKEIHENSNQSDDEKPLILRTKRHKCNYCIKSFASLSLLEKHIVIHKKHLEIVYICYICDEQFSAVDKVKNHAMTIHGVNMEKEKIIENTKMRRITGWVKKIDDDSYEQNTLAVDKTGEKKNTKFECKFCCRQFTYHKPFMAHITTHPDYNDKLLNELSKGPVDSEVSPETNIKITSHSQNIEAAPSDQVNTDINSHTENLKAISYPINEELSSQAANLEITPQENKCKDEDMSYRDDTDESEDDDEDDDGHREDDDMPAASIQCNQCGKLVATLRNLKRHLLTHSGLKHKCSICSKDFSRPDKLREHQQLKHKEELFGKSDTDNESSDDNNVSTSRKKDKSNRPYKCSLCPKAFAQPQSLANHEERHKRVRDVQKRYLCEVCSKCFAQSGSLVAHMRTHTGVKPYVCNVCSRAFTKSTYLQLHLRTHSGEKPYICQYCSRAFARANTLARHITMHTGEAKYQCQICTKSFRRLTSLNEHTYTHTGQRPYACKICSKRYNNAGSLYAHTKKCKAMQAAANQTTYPVSIHPNDNGIVPQSDNNTAPQLLIFTEKKIDEMITDETITAESPTCQFMIANVHGQKPMPPNMLEPYTIQEPDVYNMNSKQFKTPYYGLYQNM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00464137;
90% Identity: -
80% Identity: -