Dvas007444.1
Basic Information
- Insect
- Dolichoris vasculosae
- Gene Symbol
- -
- Assembly
- GCA_018907195.1
- Location
- JACCHY010000005.1:16840548-16844382[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00025 0.061 15.2 0.9 1 23 280 302 280 302 0.96 2 11 0.018 4.4 9.3 0.2 1 23 310 333 310 333 0.97 3 11 3.9 9.5e+02 2.0 7.1 1 23 378 400 378 400 0.98 4 11 4e-05 0.0098 17.7 0.4 2 23 518 539 517 539 0.97 5 11 1.6e-05 0.004 18.9 2.7 1 23 544 567 544 567 0.96 6 11 1.7e-05 0.0041 18.9 0.1 1 23 600 622 600 622 0.98 7 11 5.9e-07 0.00015 23.4 0.8 1 23 632 654 632 654 0.96 8 11 2.2e-06 0.00054 21.7 1.2 1 23 660 682 660 682 0.99 9 11 1.1e-05 0.0027 19.4 0.2 1 23 688 710 688 710 0.98 10 11 5.7e-06 0.0014 20.4 2.6 1 23 716 738 716 738 0.98 11 11 0.00043 0.1 14.4 0.3 1 21 744 764 744 765 0.94
Sequence Information
- Coding Sequence
- ATGGAGGAGGTGAAGATCTACAGCGGCCGGAGCAACGGTGGTGGCGACGGGGGCGGAGGTGTCGGCGTGCACGAGGAGGTCGGCGAGGACGTCGACGAGGACGACCTCCTCATGGCCTCGAACGGGGTCGGCGACGTCCTCGAGACCTGCCGGTTGTGCGTCAAGAGGTGCGGGATCGAGACCCAACACTGGGGCATCTTCGAGAACGACCTGTCGCAAAAGCTCATGGCATTCGCCGCTGTACAGATTCAAAAAAATGATGGCTTACCATCGATAATCTGCACAAATTGTCGAAATTTAGTCTACATGTCTTACAATTTCAAATGTCAAGTGGAAAGAAGCGATCATGATCTTCGCGAAGCTCTTCTCATAAGGCAATCGACGGTGCATTGGTCCACGGTGCCGATCGTTAAATCGGTTGAAAATATGAATGCGCTTGAAAGTATGGTTCCGGATCTTCAGAAGAATATCGATACCTCTTGTATGTCGGTTCAACATCAGCACGGCGAAAATAATCACGAACAATTTATTTTTGATATTACCAATAGTTGTAACGTAGAAAGTGAAAATTGTAAAAAGGAAGTACAAATGGAATCTAACAACTGTGTCGAAGAAGTCAATATGAACGAAAATAGTAATGCCATAGCTTTCGAAATGAGTAGAGCAATGGCAGAAACCGATAATAGGGATGATAATCTTATAGCTTTCGAGACGCAGTATGAAATTAAAAATGAATTAATGATTAAGAACGATTCCGCTAAAATAAAACCTAAGGATATTCATGATAATTCTAATCAGAGCGACGATGAAAAACCTTTAATATTACGAACAAAACGTCATAAATGTAATTATTGCATAAAATCATTTGCTAGTCTGTCCTTGTTAGAAAAACATGTAGTGATTCACAAAAAGCACCTTGAAATAGTTTATATTTGCTATTTATGCGACGAGCAATTTCCTTCGATCGATAAAGTTAAAAACCACGCGATGACAACACATGGTATGAATATGGAGAAGGAAAAAATTATAGAAAATACCAAAATGCGAAGAATAAGTGGTTGGGTTAAAAAAATCGGCGATGACAATTACGAAGAAACTGTGGAAAAGTCGGAAGAAAAAAGAAACACTAAATTTACGTGTAAATTTTGTTGTAGACAATTTACTTACCATAAACCTTTTATAGCTCATATCACAACGCATCCAGATTATAACGATAAATTATTAAACGAATTAAATAAGGGTCCAGTAGTTTCGGAGGATTGTCTCGAAGAAAATATAAAAACTAATTGTCATTTGCAAAACGTTGACACAGTTTCCAATCAAATAAATACAGAAATGAATACCCATACGCCAAATTTAAAGGCAATTTCTTATCAGATGAACGAAGAGGTTCCTTCGCAGCCATCTAATATTGAAATTCCTTCGCAAGAAAATAAATGCAAAGTCGCGGATATAAATTACAGAGGTAATAATTATGAATCCGAGGGTGACAACGACGACGAAGACGACGACGATGGTCAACGCGAAGATGACATGCCTGCAGCGAGTATACAGTGTAATCAATGCGGTAAACTCGTTGCTACCCTGAGAAATCTCAAGAGGCATCTTTTAACTCATTCCGGTCTTAAACACAAATGCTCGATATGCAGTAAGGATTTTTCAAGACCCGACAAACTTCGAGAGCACCAGCAATTAAAACACAAAGAAGAGCTGTTTGGTAAATCTGATTCGGATAACGAATCCTCGGATGACAATAACTTATCAACTAGTCGAAAAAAGGACAAAAGCAATCGACCCTACAAGTGTTCGTTGTGTCCCAAAGCATTTGCTCAGCCTCAGTCGTTGGCGAATCACGAAGAAAGACATAAACGCGTTCGCGATGTACAGAAACGTTACCTATGCGAAGTTTGCAGTAAATGCTTTGCCCAAAGCGGATCTTTGGTAGCTCATATGCGTACTCATACCGGTGTGAAGCCTTACGTGTGCAACGTGTGCAGCAGAGCCTTCACCAAAAGTACGTATCTGCAACTCCATCTTAGAACTCACAGCGGAGAAAAACCTTACATTTGTCAGTACTGCAGTAGAGCCTTTGCTCGAGCGAACACCTTGGCTCGACACATAACTATGCACACCGGAGAAGCCAAGTATCAATGCCAAATCTGCACAAAGTCCTTCAGGCGATTGACGTCCTTGAACGAACACACTTATACGCACACGGGTCAAAGGCCTTACGCTTGTAAAATTTGCTCCAAGAGGTATAACAACGCGGGATCGTTATACGCTCACACAAAGAAATGCAAAGCCCTGCAAGCAGCCGCGAATCAGACAACTTATCCGCTTTCCTTGCATCCCAACGATAATGGTATAGTAGCACAAAGTGATAATAACACTCCGCCGCAGCTTCTTATTTTTACGGAGAAGAAAATCGACGAGATGATAACGGACGAGACGATTACAGCTGAATCTCAAACTTGTCAATTCATGATTACGAATGTACATGGTCAGAAGCAGATGCAACCCAACATTCTTGAGCCGTACGCTATTCAAGAATCCGACGTTTACAATATGAACTCGAAACAATTTAAAACACCGTATTATGGATTATATCCAAATATGTGA
- Protein Sequence
- MEEVKIYSGRSNGGGDGGGGVGVHEEVGEDVDEDDLLMASNGVGDVLETCRLCVKRCGIETQHWGIFENDLSQKLMAFAAVQIQKNDGLPSIICTNCRNLVYMSYNFKCQVERSDHDLREALLIRQSTVHWSTVPIVKSVENMNALESMVPDLQKNIDTSCMSVQHQHGENNHEQFIFDITNSCNVESENCKKEVQMESNNCVEEVNMNENSNAIAFEMSRAMAETDNRDDNLIAFETQYEIKNELMIKNDSAKIKPKDIHDNSNQSDDEKPLILRTKRHKCNYCIKSFASLSLLEKHVVIHKKHLEIVYICYLCDEQFPSIDKVKNHAMTTHGMNMEKEKIIENTKMRRISGWVKKIGDDNYEETVEKSEEKRNTKFTCKFCCRQFTYHKPFIAHITTHPDYNDKLLNELNKGPVVSEDCLEENIKTNCHLQNVDTVSNQINTEMNTHTPNLKAISYQMNEEVPSQPSNIEIPSQENKCKVADINYRGNNYESEGDNDDEDDDDGQREDDMPAASIQCNQCGKLVATLRNLKRHLLTHSGLKHKCSICSKDFSRPDKLREHQQLKHKEELFGKSDSDNESSDDNNLSTSRKKDKSNRPYKCSLCPKAFAQPQSLANHEERHKRVRDVQKRYLCEVCSKCFAQSGSLVAHMRTHTGVKPYVCNVCSRAFTKSTYLQLHLRTHSGEKPYICQYCSRAFARANTLARHITMHTGEAKYQCQICTKSFRRLTSLNEHTYTHTGQRPYACKICSKRYNNAGSLYAHTKKCKALQAAANQTTYPLSLHPNDNGIVAQSDNNTPPQLLIFTEKKIDEMITDETITAESQTCQFMITNVHGQKQMQPNILEPYAIQESDVYNMNSKQFKTPYYGLYPNM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01219233; iTF_01216962;
- 90% Identity
- -
- 80% Identity
- -