Pnir017938.1
Basic Information
- Insect
- Pleistodontes nigriventris
- Gene Symbol
- BAZ2B
- Assembly
- GCA_903653215.1
- Location
- CAHLDJ010004358.1:20886-26115[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.1e-21 1e-16 62.1 0.0 4 76 538 610 535 611 0.93
Sequence Information
- Coding Sequence
- ATGCCGGGCGGATACGGGCTGGGCGCCCACCACTTGCCCTCGGCCTACGCCATCCTGGGGCGCGGCGGCAGCGCTCCGGGCTACGGGGGCCACACGGCCGCCACGGGCCCGCCCCCGCCGCCCTACTCGCACAGCAGCCTCGGCACCCTGAGCGTGGCGGCGAGCCAGGCCGCGAGCCTCGGCATCAACTCGGCCTCGGCCGCCTGGTGGACGATGGCCACGCACCTCGCCACCCAGGACTACCTTGCCAGGCTCCAGGGCGCCGCGGGCCTGCCGGCCTTCCCCCCCGGCGCCGAGAGCCTGCTGCCGCCCTACCCGCCCGCCCTGCTCAACGCGCCCTCGTACACCTCGCACAAGTCCACCAAGTCTAAGTCAAGTAAGAGTCACAAGACAGTGGCAGCCAATAGTAATAGCTCAACGTCGAGTGCGAGTCACTCGAGCACTTCGATCGTGTCGAGCCAGGTGCAAGCTTCGACGTCGCATCACAATACTAGTACCTCATTAACGAGCACCACTCAATCATCCGCTTCCCAGCCAAATGTTGTTACCGATCCAAGTAGCATACTGGGCGGCGTCCGTCTGCCACCGGACACGGAGATCATCAAGTACACATCCAGCATCGTCGGGCCGAAGGTCCCCGGCACGACGAACCGGGGACGGAAGAAGACGATATCGCTGGACTCGCCCTCCGTCAGCGTCCACGCTCCTTGTGGTCCGGGCGGCTCGGCCCTACCCGCCCATCAGACCAACAGCGGTTCCGCCTCCCTCATGATGGAGCCCACCAAGTACAACCGCTCGAGGAACGACAGCAACGAGTACAGGGACACGGTCGACCGGGTGGAGGTCATCAAGCTGCCCGCGCACTCGACCAACGGCTCGATACTCTCGGCGCCGCCCAACTACACGACCAGCAACACCGGCGAACCCGACGCGCCCCTCAACCTGTCTCTCAAGCCCGCGTCGAGGACCGGCGGGTCGCCGCTCGGCGGCAACCAGCCCCTCAGCCAGCTCAGTAATCTAAGTCAGTCGCTCCTGGCCTCCGACCGAACGTCGCGACGGAAGCCCGGGCCGAAGCCCCGGCGGGTGCCGCAGAACTCGGTGCCGGTGCCGGCGACCCCCAACCCCTCGCTGGCGCAGCTCTTCGCCGCCGCGGATTCGCCCCAGCGGCCGAGCAGCGGCAGCGAGGAGAGCGAAAGCGCCGCCGGCCCCacccagcagcagcagcacaaGGACCGGCCCAGGAACCTCGGCCGCGGCGTGTCCAAGCCCAAGAAGAACACGGTCGCCTCGCTACTCGCCCAGAGCAGGGCGCTGGGCATCAAGCCCACCCCGGCCCTCGACCCCAGCGTGCCCCTCTCGCACCAGGTCTCGCTGCTCAGATCCAACATCCTTGCGGCCCAGCTGCACGCCTCCACGCTCAGCCACCACGACGACAAGAACCAGCGATCTTTGCAGGAGAAAATGAAGAACAAGTTGATGGAGGCGTCGGGCGAGGAGAGCAATATGGACGTGACGAGCGAGAGCGGTAGCAACACCGACGTGCTCACGGACACGGACGAGGACAACGCCGACGGGACGCCGAGCGCAAAAAAGCGAAAATTAAATCACAGTGACAAGGACCTGCAAATACCACTCGAGAGAGGCTGGAAAAGAGAGACCGTCATTAAGGGCCTTGGCAAAACAGGGATTATCAAAGGGGACGTTTCGTATTACAGCCCCTGCGGAAAAATCTTCAGGAGCAGCTCGGAATTGTTAAAGtTCCTGGAGATGCAAAATCCCGCCGAACTGACGACGGCCAACTTCTCCTTCTCGTCGCGTCCGCTGGTGGGTGAATTTCTCCAGCCGACGATGGGCCTGGCGGAGGCGGAGTTCGTGAGGCTGGGCGCTCAAGAGGTGGCGAGGAGGCTCGAGGAGCTTAGAGCCGCTGGCGGCTTCCGTGACATCAGGATCAATAATCAGTACGAGAGGGATAAGTTGGCGTACGCCAAGAAATTGGCCAAGGAGGAGGCGCAGCGGCATAAGGAACAGGCTAGattgaTAAAAGAGCAAGAAAAATCGGAAAGACAAGAAGCTGTTCGAAGGGAACGGGAACTCCGAAATCAACAGCTACTCGAGGGTCGCAAGCGGCTCGCGTTCACGATCAAACAGAAGATGAAGATCATCCAAGAGATAGAGCGCGGCAAGAGCAAGAGCGATGTGGCGCGAGAGCTCGGCCTCGCCAGCAGCACCGTCGCCACGATCTGGAAGAACCGCGAGAGCATCGCCGAGAGCTGGCGGAACCGCGACATGATGCATTCGGAGCTCGACATCGAGACCGCCAAAAAGATAATCGCCCAAGTACCCCCGGTCTGCGCAAGCGtgcaacagcagcagcaccacCACTCGGCGTTAACGCTCATAGCGGAGCACCAGCCCCAGCAGCACCACCAGCACCACCAGCAGCACcagcaccaccaccaccaccagcaacaacaacaacaacaaca
- Protein Sequence
- MPGGYGLGAHHLPSAYAILGRGGSAPGYGGHTAATGPPPPPYSHSSLGTLSVAASQAASLGINSASAAWWTMATHLATQDYLARLQGAAGLPAFPPGAESLLPPYPPALLNAPSYTSHKSTKSKSSKSHKTVAANSNSSTSSASHSSTSIVSSQVQASTSHHNTSTSLTSTTQSSASQPNVVTDPSSILGGVRLPPDTEIIKYTSSIVGPKVPGTTNRGRKKTISLDSPSVSVHAPCGPGGSALPAHQTNSGSASLMMEPTKYNRSRNDSNEYRDTVDRVEVIKLPAHSTNGSILSAPPNYTTSNTGEPDAPLNLSLKPASRTGGSPLGGNQPLSQLSNLSQSLLASDRTSRRKPGPKPRRVPQNSVPVPATPNPSLAQLFAAADSPQRPSSGSEESESAAGPTQQQQHKDRPRNLGRGVSKPKKNTVASLLAQSRALGIKPTPALDPSVPLSHQVSLLRSNILAAQLHASTLSHHDDKNQRSLQEKMKNKLMEASGEESNMDVTSESGSNTDVLTDTDEDNADGTPSAKKRKLNHSDKDLQIPLERGWKRETVIKGLGKTGIIKGDVSYYSPCGKIFRSSSELLKFLEMQNPAELTTANFSFSSRPLVGEFLQPTMGLAEAEFVRLGAQEVARRLEELRAAGGFRDIRINNQYERDKLAYAKKLAKEEAQRHKEQARLIKEQEKSERQEAVRRERELRNQQLLEGRKRLAFTIKQKMKIIQEIERGKSKSDVARELGLASSTVATIWKNRESIAESWRNRDMMHSELDIETAKKIIAQVPPVCASVQQQQHHHSALTLIAEHQPQQHHQHHQQHQHHHHHQQQQQQQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00845270; iTF_00304477; iTF_00707860; iTF_01467095;
- 90% Identity
- iTF_00304477;
- 80% Identity
- -