Pnir002616.1
Basic Information
- Insect
- Pleistodontes nigriventris
- Gene Symbol
- E2F5
- Assembly
- GCA_903653215.1
- Location
- CAHLDJ010003857.1:15439-17644[+]
Transcription Factor Domain
- TF Family
- E2F
- Domain
- E2F_TDP domain
- PFAM
- PF02319
- TF Group
- Helix-turn-helix
- Description
- This family contains the transcription factor E2F and its dimerisation partners TDP1 and TDP2, which stimulate E2F-dependent transcription. E2F binds to DNA as a homodimer or as a heterodimer in association with TDP1/2, the heterodimer having increased binding efficiency. The crystal structure of an E2F4-DP2-DNA complex shows that the DNA-binding domains of the E2F and DP proteins both have a fold related to the winged-helix DNA-binding motif. Recognition of the central c/gGCGCg/c sequence of the consensus DNA-binding site is symmetric, and amino acids that contact these bases are conserved among all known E2F and DP proteins.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.4e-29 2.4e-25 89.9 0.3 2 65 60 124 59 124 0.98
Sequence Information
- Coding Sequence
- ATGAATTTAAGTGGCGCAGGGGTCGCCGGCACCGATGGCGTATTGGCGTTCGCGAGCTGTTGCGGCAATTTCGAAGGAGGCGGCTGTGAGCTGCTAAGTTTGTGGTACGAAACTCTGAGgcgttttgaaaattttaacgaCTACTCTAGGATGGCGGACAATCAGCAGAGTAGATATGAAAAGTCCCTCGGATTGCTGACCACACGTTTTGTCACCCTCTTGCAGAAGGCTAAGGATGGCGTGCttgatttaaaagtgGCTGCAGATCTATTGGAAGTGCGACAAAAAAGGAGAATATATGATATTACAAATGTTCTTGAAGGTATTGGTTTAATTGAAAAGAAGagtaaaaatagtattcaatGGAAAGGAGCAGGACCTGGATGTAATTCACAAGAGGTTGGTGAAAAGCTCACTGACTTAAAAGATGAATTAAGACAATTAGAAGAACATGAGCAAATGCTAGATTTGCACACACAATGGGTTAAAcagagtataaaaaatgttgagtgTGATTCACTTAACAGACGATATGCATATATCAAATATGAAGacctaaaagatatttttaaagaggAATTTATATTAGCTGTTCAAGCACCAACAGATACACAATTAAATGTgccaaaaattgaaaaaATGGCAGAAAGTAGTattaataaggaaataaattatgaaatgcatttaaaaagtacaacCGGCGAAATATCTATATACATCATTCAACCAGAACTGGCAGAATCTTATGATAATAACTGCTTAAAGCTGAGGTTGCAACCAgaaccaaaaaaaattaaaaaagaaaaagatatagaGGAAAAGAAGGAAGAAATTAAACCAAAGAAGAAAGTTGgaagGCCACCGAAAAATGTGAGCAAAACTATCCCTGTATTATCagaagacgaagaagaagaagatcaAGATTTATTGGAAGCTAAAATAGTTCTTCGAGATGTTGATATGACAGTTTGTGGTCCATTAGTAAGGTTGAGTCCTCCACCTGAAGAAAAAGATTATCAATTTAATCTTAGTGACAGTGAAGGTCTCTGCGATCTTTTTGATATTGTGGCACAATGA
- Protein Sequence
- MNLSGAGVAGTDGVLAFASCCGNFEGGGCELLSLWYETLRRFENFNDYSRMADNQQSRYEKSLGLLTTRFVTLLQKAKDGVLDLKVAADLLEVRQKRRIYDITNVLEGIGLIEKKSKNSIQWKGAGPGCNSQEVGEKLTDLKDELRQLEEHEQMLDLHTQWVKQSIKNVECDSLNRRYAYIKYEDLKDIFKEEFILAVQAPTDTQLNVPKIEKMAESSINKEINYEMHLKSTTGEISIYIIQPELAESYDNNCLKLRLQPEPKKIKKEKDIEEKKEEIKPKKKVGRPPKNVSKTIPVLSEDEEEEDQDLLEAKIVLRDVDMTVCGPLVRLSPPPEEKDYQFNLSDSEGLCDLFDIVAQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01216585; iTF_01428076; iTF_00708365; iTF_00304882; iTF_00304308; iTF_00707639; iTF_00463803; iTF_01523835; iTF_00845086; iTF_01274274; iTF_01464835; iTF_01035236; iTF_01036818; iTF_01486909; iTF_01036000; iTF_00712646; iTF_00713496; iTF_00714173; iTF_01190119; iTF_00305451; iTF_01109901; iTF_01112374; iTF_01110719; iTF_01113215; iTF_01111552; iTF_01469455; iTF_01467752; iTF_01468624; iTF_00738868; iTF_00309304; iTF_01380408; iTF_01381123; iTF_00143673; iTF_00969369; iTF_00968590; iTF_01465978; iTF_01379808;
- 90% Identity
- iTF_00305451; iTF_00304882; iTF_01428076; iTF_00845086; iTF_00304308; iTF_00707639; iTF_01216585; iTF_00708365; iTF_00969369; iTF_00968590; iTF_00463803; iTF_01523835;
- 80% Identity
- -