Pcon005790.1
Basic Information
- Insect
- Plectrocnemia conspersa
- Gene Symbol
- egg
- Assembly
- GCA_009617715.1
- Location
- VTFK01000284.1:184564-196208[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.3 1.4e+04 -3.8 0.0 29 43 645 659 638 661 0.81 2 3 0.47 2.9e+03 -1.6 0.0 28 38 930 944 902 946 0.68 3 3 7.8e-12 4.7e-08 33.0 0.1 5 74 978 1040 975 1043 0.88
Sequence Information
- Coding Sequence
- ATGGAGTGTGTCGAAAGCAAAAGCGATAAAGAAGCTGATAGAGATACAGTTATGGAATGCGTCGAAAGCACAAGTGATGCAACAatggatattattaaaaataaaagcgaaaAAGAGGCTGATAACCATGCAGCTATGGAGTGTGTTGAGAACATAAGTACAGATAATATTGATGATTTAATAGAGAATGCAAAAAAAAGCGATAAGTTCAGGGAACTCCAGTTGCTCGAAGACAACATAATTAAAAGTCTAAATGAGACTAGGATTGATGATACTAACCAAACAGGGTCTAAAACATTAATAGACAATTTAACAGCTGAATTGCAGAACATTGCTTCTAATAAGGATAATATGAATGTTTCTAAGCAAGACTTGgaaaatttgaatattgaattaaaaaacactatgaaAACTCTATTTGGAGAAGACAATGCTAAGAATGATAAGCAGAAAGAGGCTATGGATAttgatGAACCGATTGTAAAAACTGATGAAGTAAAATCTTCCGATGACTCGAAAACAGCATCGTCTAGTACCGTTCAAGAAACCACAACGATAACTGAAAGTACAAAGGACGATGTGATTGATCTATCCGACGAAGATAAAGAGTCTCAACCTGCTGATGGAAAGGTAGCGGATAAAGCATTGGATACAATGTCAAAGAAAAAGAAGATAACACCTAAAAGaccaacaaatttaaaaactgattCAATGGATATAGTCGATTTAGAAAGTTCCGACGAAGTAGAAAATGCTAAGAAATGCAAAACGATGACTGTTTGTATTCCATCTTCTATTGAAATAATGTCTAACAGCAAGACGCAATCTTCAAAGATTTTATGTAGTGCTGATACGGGAGCGAGTGTTATTAGTGGTTTACCGGCAACACAACCTAAGAATACTTCTTCTGTGAGAATAAACACTGCTGAAATTACAATATCGACCATTTCGCGCAACACTAATGATGACATGGCttctattaaaccagtagaaatatttaatctCGATAGTGACGATGAAGATGACTCGAATAAAACGAAAAGTGTACcagttgaaaagACTCAAGAAGAAGTAACACCTGCAAAGGTCGTTACAGAAATAAACGTCGAACCACAGCCAGATCCAGTCCCCGACCCTCAAAGCAATCGTTCCTGCATTCTATCATGCAAAAGGTCGTGTTCTGAGCTGGTTCCGAGTCCGCTCTTTGCGTTAGGTATGCACAAAGTAAAAAGGGCGAAGAGGGAACGCCATCCAGAAATGTGCGTAGATTGCCTGAACAGCACCATCAGAGATATGGagtatttgatcTCTAGGTTTTGCGTCGTAAAACCCTTGATAGATACAGAGATACCGTTTAACGATGAACATATTGAAGTGATTGATTCGGATTCGGAAGGAGAGGATGAGGAAAGTATAGATATCGTTCCGTATTCGACTGGCGATCCACTCCCTGATGAGGAGATAGAAATGATTGAGGAGTCTCTGCCTGAGGTGTTGAAcgacatgtttataaaatataattttaacaaacaaattgATATGTGCACTGAAAAAATTGTTGAAGAGGTCAATAAGCTTGAAGaggaaacaataaatatgaaacgGTGCATCGACAGACTAATGATCAACACAAATCGTATAAGACACGAGCTCTATGACAACATCAAAATAAAACGACAGGTTCGCCCGTCGTTAATAATCCCATATGATTCTGAAGGTGCAAATgctCAATCTGACGGAAGCGCGCTATATGAATCTTATGTCCATGGAAGTAGCTCAAAAGAgaacAACACCGGGAGAAGATCCACCGCGAAAAAAACGAATCTCAGAGAACTTGAAAAGGATATTCCACCACCAGGAGCGTACGTGCAGCCCACCATATCAATCGGAAGCATAGTTTACACCGTAAAAACATCTGTGTTCGGTGGTTGGGTTCAAGCTAAAGTCGTCAACATAAGTCCGATCGGAAAACCCATACAAagaACTAACGGAGCGCCACTTATATTCTCAATGTTGACGGTGGAATTCTACTCCATGGGTCGTTGTAACACTAAGCAAGTGACTGGTCGTCAGGTCGCTTGTTGCAAACCCGCCAACGTCAGATATCCTATAGgcacTCGCGTCATTGCTTTATTTAAAGACACTGTCACTATAGTTAAAAAGGATGCATATTATTCGGGCGTGATAGCTGAATGTCCTGCACCAGCAAATAATTACAgATATCTCATATTTTTCGATGATGGTTATTCACAATACGTTCCCCATAAGGAAGTCTTGCCCGTGGTCGAACGTTCGCAGAAAGTTTGGGAAGATGTACATCCCGATTCGAgggattttgtcaaaaaatatttactcacgTATCCGGAACGACCTATGGTACGCATGCAGCCAGGGCAGATCCTCAAGACAGAGAAGAACGGGCGTTGGTGGGACGCTCGAGTTATATCCATCGATGCTTCGTTGGCGCTGTTGAGATTCGAAGGCGCAGGACAGAGAGACGAATGGATTTACAGAGGCAGCACCAGGCTCTCGCTGCTCTACCAACAGTTGCAAGCTGCCGATAGGCGAGCGCACGCTCCAGGCCGTCATCGACCTTCTGGAGCTATCACCAATCGATCCACGTCGAAAACGACCGATTTTCCTTATGTGGAATATACGAGGACTCAAGAAATGGAGACTCCCGAAGAGaatcgtCAGAAACCTCAGCGTGCGGTGGCTAGAAAGAGCACTGCTACTAGTACAAGTAACATGGATCAGCTAGAAGATCTTACGCCGGAGTCGTTAGATTCAAATAATACTCAAATTAAAAGCAGAGTTGTGTACTTTACGCCGAAAACGTGGATTCATCCATCAAGAATGGTGTGTTCACATGTATGCACAGAGAAATGTGCCAATTCGACTCTTATGCCGCTCAAGAGTCTGAAGAATTACAATCCGCTTGCAAGACCTCTTGTGTCAGGCTGGGAGAGgCAACTGATGAGATTCCGTTACAAACGGTATGTGATGTACAAAGCGCCCTGTGGCAGACGCTTGCGAGATGTGGAAGAACTGCACCGTTATCTGATGCAGATAAACTCTGAGATGAGCATCGACTTGTTCGACTTTGAATCTACAATAAATTGCTTAGCCgaatttacattacaaaaacgCTACGTGACTAacattgACATATCGCATGGTAAAGAAGCTGTTCCGGTTCCTTGCATCAACTATTATAATAGTTCACTACCCGAGTTCTGGTCTTATAGTACCACCAGAGAAGCGACTCAAGGTGTCAATCTGAACTTGGACGAAGACTTCTTGTGCAGTTGCGACTGCACTGATGATTGTCAGgaCAAGGAAAAGTGTCAATGTTGGCAATTAACTTACGAAGGTGCACGATTCATCGGCTTGGATACTTCTTTAGTGGGATATCAATACAAACGACTGTTGGAACAGGTCCCAACCGGGATATATGAATGCAATTCGAGATGTAAATGTCGCAAAACTTGTCTTAACAGAGTTGCTCAACATcctttgcaattaaaattacaaGTTTTTCACACTACTCATAAGGGTTGGGGTATTCGGGCCCTCAATGATGTTCCGAGAGGAACTTTCATTTGCATCTATGCCGGAAACTTACTCACAGACGCTGTAGCAAATATCGATGGCGGTATCAACGAAGGCGATAAATTTTTGGCTGATCTTGATTACATAGAAGTAGTCGAAAGACTCAAAGACAGTTATGAATCTGATGTGCCGGAAGAGGACAAGATAAACGAATCTATGtctaATTCGGATGGAGACGGAGATGATGACAACGAGGGTGATGATATCGACGATCATGGTAAATCGGGAGCTCATGGTGAATCCGACGAAGAATTTAATCCCAAAGCTTTGGTTCCAGACTTCTATATAAATAGTCCCACAAACACCGTCAAGCGATCGTTACGACCTAGGCGCAAACCAAGCACTACGGGTTCCGACACCAGCAATAAGgataaaacgaaaaaatatcagACTGAAAATGACACAGAAAAAAATGTGCCAGTTAAATCGACTAATAATAAAGACGACCAAGAAAAACCTCCTGTGGAAAATGTTGAAACTGAAAAAAGAGATGAAGAAATGAATTTAACAGCTACACCTGCTAACGATAAAGAGGACAAAGAAAAATCTGCTACAGATAGTATTACAGAAGCAAAAGATGCATCTAAATCGGACGAAATCCCCTAA
- Protein Sequence
- MECVESKSDKEADRDTVMECVESTSDATMDIIKNKSEKEADNHAAMECVENISTDNIDDLIENAKKSDKFRELQLLEDNIIKSLNETRIDDTNQTGSKTLIDNLTAELQNIASNKDNMNVSKQDLENLNIELKNTMKTLFGEDNAKNDKQKEAMDIDEPIVKTDEVKSSDDSKTASSSTVQETTTITESTKDDVIDLSDEDKESQPADGKVADKALDTMSKKKKITPKRPTNLKTDSMDIVDLESSDEVENAKKCKTMTVCIPSSIEIMSNSKTQSSKILCSADTGASVISGLPATQPKNTSSVRINTAEITISTISRNTNDDMASIKPVEIFNLDSDDEDDSNKTKSVPVEKTQEEVTPAKVVTEINVEPQPDPVPDPQSNRSCILSCKRSCSELVPSPLFALGMHKVKRAKRERHPEMCVDCLNSTIRDMEYLISRFCVVKPLIDTEIPFNDEHIEVIDSDSEGEDEESIDIVPYSTGDPLPDEEIEMIEESLPEVLNDMFIKYNFNKQIDMCTEKIVEEVNKLEEETINMKRCIDRLMINTNRIRHELYDNIKIKRQVRPSLIIPYDSEGANAQSDGSALYESYVHGSSSKENNTGRRSTAKKTNLRELEKDIPPPGAYVQPTISIGSIVYTVKTSVFGGWVQAKVVNISPIGKPIQRTNGAPLIFSMLTVEFYSMGRCNTKQVTGRQVACCKPANVRYPIGTRVIALFKDTVTIVKKDAYYSGVIAECPAPANNYRYLIFFDDGYSQYVPHKEVLPVVERSQKVWEDVHPDSRDFVKKYLLTYPERPMVRMQPGQILKTEKNGRWWDARVISIDASLALLRFEGAGQRDEWIYRGSTRLSLLYQQLQAADRRAHAPGRHRPSGAITNRSTSKTTDFPYVEYTRTQEMETPEENRQKPQRAVARKSTATSTSNMDQLEDLTPESLDSNNTQIKSRVVYFTPKTWIHPSRMVCSHVCTEKCANSTLMPLKSLKNYNPLARPLVSGWERQLMRFRYKRYVMYKAPCGRRLRDVEELHRYLMQINSEMSIDLFDFESTINCLAEFTLQKRYVTNIDISHGKEAVPVPCINYYNSSLPEFWSYSTTREATQGVNLNLDEDFLCSCDCTDDCQDKEKCQCWQLTYEGARFIGLDTSLVGYQYKRLLEQVPTGIYECNSRCKCRKTCLNRVAQHPLQLKLQVFHTTHKGWGIRALNDVPRGTFICIYAGNLLTDAVANIDGGINEGDKFLADLDYIEVVERLKDSYESDVPEEDKINESMSNSDGDGDDDNEGDDIDDHGKSGAHGESDEEFNPKALVPDFYINSPTNTVKRSLRPRRKPSTTGSDTSNKDKTKKYQTENDTEKNVPVKSTNNKDDQEKPPVENVETEKRDEEMNLTATPANDKEDKEKSATDSITEAKDASKSDEIP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -