Pcon018946.1
Basic Information
- Insect
- Plectrocnemia conspersa
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_009617715.1
- Location
- VTFK01000142.1:334703-339367[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2e-96 4.8e-92 308.9 25.2 1 300 91 409 91 409 0.95 2 3 0.016 3.8e+02 0.6 2.6 122 171 409 458 407 461 0.88 3 3 0.24 5.8e+03 -3.3 6.5 206 236 452 481 425 484 0.50
Sequence Information
- Coding Sequence
- ATGGAGGTGGATTCGCACCCAGTTTGGTCCAGCGATAGGGAGTTCACCGATGGTGATCTAGACTGCTCGGACGATGAGAGCGAGGATACTTACCGTCCTCCCTACGAGACGGCTTCCAACGCCAAGACTTGCAACGAGGCAGTCAACGGTTTTGTCCAAAGAACGAAGAAACTGTCCGGTTCCTCTGCAGAAAGTCTGGCCCTTAATGGCAATGTTAACGGGATGGACGATAGCAGCATCGAGGGGATTCTGGGGAAAGATCACGATAAAgCTGAAGCTCGATTGGCAGCTCGCCGGCAGGCCAGAGCAGAAGCTCGCGAGATTCGCATGAGAGAGATCGAAAGGCAACAAAAAAAAGAGCAAGAGGAAAATGCTGACCGAGCGTATGACATGTATCCTGCTGATAAGAATCTTGCATATGTTGCGATACATAACTATTTTGTTTTAGATTATTCCTATTCCTCGAGAGTATCGAGAGTGGCCGCAAACACGCAAGTGTCCACCCCCAGCGGAAGATTGGCATCCACCGGCAACGTCAACTCATATCATTCGTCACGAAGGAGCTCTGAAGATTCTATCGAAGAACCAGGCAGCATCAGAGACATTCGATACGAGTTGAAAGAAGTCGAAGAAAAATTCCGCAAGGCCATGATACTGAATGCTCAACTGGACAACGACAAAGCGTCCTTTTCGTATCAACTGGAATTGTTGAAAGATAAATTAGAAGATTTACAAGAACAATATACGCAATTGCAGCGAGAACATAAAGATAAATGCCGAGCCCATGATACACTAGTCCGCGAATGCAAGGTGACTAAAGAAGAACTGGATCGGTACAGTGCAGCTCTGGCATTGCGAGACAGGTGCATCGTAGAGGCAGGTATGGAGCTGGTATCGGTCGAAGCACCCGAAGGCGGTGGAGTGAGTGCGGCGTTGGTATCTAGTGCTAGCAGAGAAGCTCTGGAGTCCGCCGGACAAGGCACTCTAGATGTACGGTTACAAAATTTGTGCTCCGAACGGAAGTCTCTCATGCAAGAAGTCCTGCAACTAAAACAACAGTTGGAGGAGGAGCGATCCAAGAAGAAAAACAACGTTAACAACTCGCATAATGGTCCATCATATGGATCGGACAGTGATTCGGACTCATTTGAACATCAGAGAGAAAATTCCAAGTTAGTCGCCGATTATAAATTTAGAGCAACAAAGGCCGAACAGGACGTGTTGACGCTGCAGGCGACAGTTGCACGTTTAGAAAGTCAAGTGATTAGATACAAAAGTGCCATGGAACAATCCGAAAAGATCGAAGACGAGTTGAAGTTCGACCGCCGAAAGTTACAGAGAGAGTCTCGAGAGGCGCAGAACAGAGTTGAAGAGTTGGAAACAGAAAATAGCCACTTGAACAAGCGTCTTGACAAGCTGAAGAACGCGAAGTCGGCGCTCCTCAAAGAGCTTTGA
- Protein Sequence
- MEVDSHPVWSSDREFTDGDLDCSDDESEDTYRPPYETASNAKTCNEAVNGFVQRTKKLSGSSAESLALNGNVNGMDDSSIEGILGKDHDKAEARLAARRQARAEAREIRMREIERQQKKEQEENADRAYDMYPADKNLAYVAIHNYFVLDYSYSSRVSRVAANTQVSTPSGRLASTGNVNSYHSSRRSSEDSIEEPGSIRDIRYELKEVEEKFRKAMILNAQLDNDKASFSYQLELLKDKLEDLQEQYTQLQREHKDKCRAHDTLVRECKVTKEELDRYSAALALRDRCIVEAGMELVSVEAPEGGGVSAALVSSASREALESAGQGTLDVRLQNLCSERKSLMQEVLQLKQQLEEERSKKKNNVNNSHNGPSYGSDSDSDSFEHQRENSKLVADYKFRATKAEQDVLTLQATVARLESQVIRYKSAMEQSEKIEDELKFDRRKLQRESREAQNRVEELETENSHLNKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -