Pcon001822.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Plectrocnemia conspersa
Gene Symbol
sip1
Assembly
GCA_009617715.1
Location
VTFK01000086.1:3625-7845[+]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 4.5e-51 5.5e-47 161.1 3.4 1 274 358 615 358 616 0.95

Sequence Information

Coding Sequence
ATGTCGGACGATGAGGTTGAGAGTTTTAATATTACAGATTACGATTTAGACAATGAATTCAATATCAATAGACCACGTAGGAAGCTTACCAAGGAGCAGCAAATGCTTGGGATATGGGCCGATAGTGACGAAGAACCGGAAGAAAATTCACGCAGGAATAGAAACAAAAAATCGAAGGACTTTTCCATGGGATCGATCGGTTTTGTAGCTGGAGGCATTCAACAGCCTGGGAAAAAGGAAGAAATCGAtgATGAATCCAAAGAGCCGACTGTTGAAGTTGGAAGTTCTTCGGAAGAAgaagacaaaaaaaatgaaaacgaaGATCAAATAGCTGGTTTAAGAAGGCGCGGTTTCGGCGCTTATAAGCCGCAGTCCTTATCAGGCGGCGTAGGGAATTGGGAAAAGTATACCAAAGGAATTGGAGCTAAGTTACTATTACAgatgggCTATCAACCTGGAAAAGGCTTAGGAAAATCTCTTCAAGGAATGTCGACTCCGATAACGGCAGCTGTGAGAAAAGGACGAGGCGCTATTGGAGCATATGGACctgaagtaAAGATGAAAAAAGGGCAAGAACCCGAAGAAGAAACAAAAGCTATAGAAGAAAAGGAAAAATCTAATCAATGGAAAAGAAGTCACaagaaacgttatttttataaaaatgctgaaGATGTAATCCAAGAAGGCAAACCATCTCAAGGAGCTCATACTGAGAAAACgtCTGCATTGGCTAAAGTCACAGTTATTGATTTACGAGGTCCTGAAAAGCGAGTTTTAAGCGGTTACCATGCTCTTAGAGCGGCTGCTCCGAGATACGAAGATGTTTCACGTAAAGAATGCGTGAATTTGGCTTTACCAGAGTTAATGCACAATCTTAATTTGTTGGTCGATATGTGCGAAcaggaaatAATCGATTGCTCTCGAGAAGGTCACGCCGCCGAAGATAGGAAAATCGCTTTAGAGCGAGACATGAAAGATTTGAAAGAATCAATCAAGCATGATGAACGCGAAATCAACGCattggaaaaaattataatcgaaattaaaaagtTGGACAGATTAGATCTATCGTTGGACGAAGCTTATGAAGTATTTAGAAAGCTTCagacaaatttCCCGACTGAGTATGATTCATTAGGTTTTGGTAATGTAAACGCTTGTGGAAGTTGCTTGCGGAGTCTGGTTGGTGCAGCACTAGCGACATGGTTACCATTGCGGAATCCGCATGCTCCTGTAACTCTCTTGGAAAAATGGACACCGTTACTATCACCGACGGCTATTCACGAAGTGTTTTGGAGGCCTTGGCTCGAACAAGTACAATTAGCTTCATTGGAATGGGATGTTCGTGAGCCTTCATCGATGAAAAGTGTCATCGACGCTTGGATACCAATAGCTCCTCAACAAGAAATACGCACAATACTCAGATCTGCGATCGTTCCACGACTTTCTACTGCTGCGATGCGTTGGGATCCAACTGTCGACACGCTGCCTTTACATTACTGGATTTTACCATGGCATCAATATGCAGgtgaTATGTTAGAAGAATCTGTGTATCCAGAATTACGATCAAGACTAGTATCGGCGCTTTCAGCTTGGCATCCTGCAGATGGTTCAGCTTTGGCTTTGTTAAGGCCATGGTCGCAAGCTTGGTCTTTGGCTTTACCGGCTCTGGCGAGAGCTCATATATTACCACGTTTAGAAGCTTGTATGCGTACTGTAACAGTAGAGCCTGAGGGAAACCCTAATGAAAACTGGGGCTGGTGTGCTTCATGGCAAGAAATAATAGGTGCTCGAGCTTTAGCTGGAGCTGCCGGAAGAGCCTTATTGCCTCGTTGGTTAGCTTCTTTAGCGTCGTGGTTGAATCGCAGACCACCTCATGCACATCTCATATCTCATTACAGTTCATGGAAGGCAATGTTTTCTGAGGAACTGTTAAGAGAGCCGGAGCTCGCCGATGCATTCCGGAAAGCTTTAGATATGATGAATAGATCAATGGACTCCCCTGTCACTGTAATCCCTATTCCGATGGCACCGCCTGCTCCGAGAATATCTGGAAACTCGCAAGGAATAGCCGAAGTGATTGCTAGCATCAATCAACAGAAGAGCTTTACAGAACTATTGGAGAGTCGGTGTATGGAGCGTGGCGTCAGTTTGGTACCGTTGGTGGGTCGATCCAGAGACGGAAGACCTTTATACCGCCTCGGTACTAACGTTCAGTGTTACGTGATGCGAAACGTGGTGATGCATTCGAATGATCTCGGAAGAACATTTCAACCGATATCTTTGGACAGCTTACTGCAGTTGGCTTCTAATTAA
Protein Sequence
MSDDEVESFNITDYDLDNEFNINRPRRKLTKEQQMLGIWADSDEEPEENSRRNRNKKSKDFSMGSIGFVAGGIQQPGKKEEIDDESKEPTVEVGSSSEEEDKKNENEDQIAGLRRRGFGAYKPQSLSGGVGNWEKYTKGIGAKLLLQMGYQPGKGLGKSLQGMSTPITAAVRKGRGAIGAYGPEVKMKKGQEPEEETKAIEEKEKSNQWKRSHKKRYFYKNAEDVIQEGKPSQGAHTEKTSALAKVTVIDLRGPEKRVLSGYHALRAAAPRYEDVSRKECVNLALPELMHNLNLLVDMCEQEIIDCSREGHAAEDRKIALERDMKDLKESIKHDEREINALEKIIIEIKKLDRLDLSLDEAYEVFRKLQTNFPTEYDSLGFGNVNACGSCLRSLVGAALATWLPLRNPHAPVTLLEKWTPLLSPTAIHEVFWRPWLEQVQLASLEWDVREPSSMKSVIDAWIPIAPQQEIRTILRSAIVPRLSTAAMRWDPTVDTLPLHYWILPWHQYAGDMLEESVYPELRSRLVSALSAWHPADGSALALLRPWSQAWSLALPALARAHILPRLEACMRTVTVEPEGNPNENWGWCASWQEIIGARALAGAAGRALLPRWLASLASWLNRRPPHAHLISHYSSWKAMFSEELLREPELADAFRKALDMMNRSMDSPVTVIPIPMAPPAPRISGNSQGIAEVIASINQQKSFTELLESRCMERGVSLVPLVGRSRDGRPLYRLGTNVQCYVMRNVVMHSNDLGRTFQPISLDSLLQLASN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-