Pcon008413.1
Basic Information
- Insect
- Plectrocnemia conspersa
- Gene Symbol
- -
- Assembly
- GCA_009617715.1
- Location
- VTFK01000108.1:21871-22398[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.2e-10 6.3e-07 29.4 0.1 2 40 10 48 9 52 0.92
Sequence Information
- Coding Sequence
- ATGCCTCCCAAACGAGCATTGTGGTCTGAAAATGACTTGGTGTCGGCTGTTCGAGCGGTAGAAAGAGGAATACTGAGCACCTATAAAGCTGCTGAGAGGTATAAAGTACCCAGAAGAACCATTAGAAATCATCTTCAGACCggcagtttaaaaaaaacactagctcGAAAATCCATACTCAGTGACGACCAGGAAACTGAACTTGTAAGCAGAATCATAAGGTTCGCTGAAATTGGATTGCCTGTGACACCACTGATTCTCCGACGCTTGGTCTTTAAATTTTGCGAACTTAATAACATCAATCATAAGTTCAACCCATCTCATAAAGTTGCTGGTAAAGATTGGTTTAATGCATTTATGAAAAGACATCCAGAAATATCTAGAAGAAAAAAAGCTCAATTCATAAACCCTGCCAGAGCtcaaaagcttaataaatttattgttgatgATCACTTCAAGCGACTGAGTGAAGTTTATGATAATTTGGACTTGAAAAGTCATCCTGAAAAGAATTTACAATATGGATGA
- Protein Sequence
- MPPKRALWSENDLVSAVRAVERGILSTYKAAERYKVPRRTIRNHLQTGSLKKTLARKSILSDDQETELVSRIIRFAEIGLPVTPLILRRLVFKFCELNNINHKFNPSHKVAGKDWFNAFMKRHPEISRRKKAQFINPARAQKLNKFIVDDHFKRLSEVYDNLDLKSHPEKNLQYG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00042559;
- 90% Identity
- iTF_01218260; iTF_01218261;
- 80% Identity
- -