Pcon003014.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Plectrocnemia conspersa
Gene Symbol
rfx7.L
Assembly
GCA_009617715.1
Location
VTFK01000038.1:528565-535730[+]

Transcription Factor Domain

TF Family
RFX
Domain
RFX domain
PFAM
PF02257
TF Group
Basic Domians group
Description
RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 4.4e-33 5.3e-29 101.1 0.2 3 78 129 204 127 205 0.97

Sequence Information

Coding Sequence
ATGGACGGAACGTGCGACGTTATGGCCGCGCAGCGTGCGAATAAAAAGTCGGGGGCGGGGGCCGGCGCCCTGAACGCCCGATGGAGGCGGTCGCCCTCCGCGACTGCGCCTCGGGCGACGGTTTCAGCCGACTCTGCCGCATCCGCCGCCTCCGCCGCCGCCCCTCAGCCGATGGACGCCGACAAAATCGACAGAATGCAGCAGGTCGTCGAGCACACAGTCAGCCCCGAGTCTCGCCAGCACATAATGCAACTGCTCTCCCAGATCAACTTACTCAACGGCACCGAAAAACTTCTGCTATACCTCAAGTTGCCTACCGGCGCTCCGACGATAGATCCACTCAAACAACCTATAAATCCGTTAGGTTCAAGAGCCGAAATACATCAGACGGTCATGTGGATACAAACGCACTTAGAAGTCGATCCGGACGTTTCGCTGCCAAAACAAGACGTTTATAACGAATATGTACAATATTGCACGAGTACAAGAATGAAAGCTTTATCTACTGCAGATTTCGGAAAAGTCATGAAGCAAGTATATCCATGCGTTAAACCCAGACGGCTCGGTACTCGTGGAAATTCAAGATATTGTTACGCCGGTATGCGAAAAAGGATAAAATTAGAAGTTCCTCAACTGCCTGATTTGGATGAGAAGCCCaagAATGCTGAAACGCCAGTTGCGCAAAACCATCTGTTAGTTGCAACATCGCAGTTGATTAGAGAATGGGCTGAGAAAATGTTAGgatttaaatttacaaatctaCAATCGTTGGCTCATCATCTCATAGAAAAAGACTTTGTCAACAACTCTTCAAATTCTGCTCTTGTACTATCTAATTCCAATGCCATCTTAGACGagaGTTACGAGGTTGTCAGCAATGATAAGAGTGACGACGATCCGAAACTACAACAGAGAGGAGTTATTAAGCAGCTTAAAAGAAAAATTcagTCACAACCCCAGAGTAGCCAGCCTAAAATTGTCAGTGCGCCCAAGAAGAGTAAATTGCACGATTCTCCCGAAGGTTGTTCTAACACTTTGTACAGACAAATCGAGACGCCAGGAAAGGAATATCCCATCAAAAGGGAGAAGGATCCGTTGACGCCTGAAGCGTTGTGTTATGTGCCTCGCGTGGATGAAAGTATCAAAGATTATACATTGCGAAAGTCCACCGAAGTGTTAAATGCAGACATTTCACCACCTCAGAACTACTCTTCTAATCAATCCAGGGAGTGTTCTCTCATTAAAGCTGTTAATCTTGCGCCTACAATGAATCCTAGGAATTATAATTCACCAGTCGTTATGAACTGTACGAAAAACTCGGTTTACAAATGTGACAATGAGCACATGGCTCCGAGCGTGACTCATCAACCGACTAATCTAAGCCGAAATACCTATGTACATTATAACTCCGATCCTTACCATCATCAATTTCCGCACTCCAGTTCTAACGTTCCGATAAACCTCAGTCACACCAATACTGACCACGATAACGTTCCGAAATTATATAAGCCTCCAGTTTTTAACAAGAGCAACGAGTTCGCCACACCTGTTTGCGAAAACGATACTCTCAATTTGTCCACGACAAATAGGCGGGATAATTGGCCTCCAGTGCAGACTCATCACCCGCCGCCTCCTCCGACCAAACTACCTTTACCCGGAAAGAAGATGATATTGGAAACTTACAATAACGAAAATCAGATCAACGCTCAGTCGTATTATAACAATCAAGCGATTAAACCTTCGCTGGTGTCTCCTGGTAAAATCAGCGATGCTCTTAATCGAGGCGAATATCTTCCTAAAAAGATGCGAGCTACCGAGACGTTCGGCGGTAAATTGGCAGCAGCTAGACTATTACACAATGCCGTGACGAACGTTCCCATTAACGATCCTGATAAGTACAATAAAACGCCAATTGCCAAAGTACCTGGGGAATTTTCTCAGTCGTCTCCTGCGAGTTCTCAACCAGAGGTGCCAATTACGAATTTAAATGCAGAAAAGAATCAATCCGGCGATAGTGCAGCCGATTCGAAGATCAACGACAGCTATCGACAGGTGTCGAACTACATGCCCTCTACGAATTTAGCAGAAAGCAGTGTTGAAGAATCGGCTCCCAAGGTGGATTTGGATAAGATCAATTTGAAAGCTTATAACGTCAAAAGAGTTCCGAGGGTTTATAATAAGAGAAACcctaaagatttaaataaaaatatgccggATAAACCGGCCACTCGCGGAAGACCGAGAAAAAAATCGTTGACAAAAGCAAAATACACTCGCCGGCAGCCAAAGAATAATAATGGTAAATTTTCAACTTGCGATCACACTAAATATCCAAAGCGTTCCAGCGATTCGTGTTGCAGTCTCACGGATACGATTAACATCAAAACTGGAATTATATGTAGAGAAAAGCATTCCGAGATTCTGAATCGCGAGAGAGTGTCTAGCATTTGTAACATGGATAAGCACGCGTTGGACGATTACTTGATTAACGAAAGCAGCAGTCAAGAAAACGAGGAAGAgttgatgaaatattttcaacacaACGCCGATAGTCTATCTAATGATGAGAATGTAAAAGAAATCGCTCCCGAGAATGACGATGCTGACGTATctaaaagtaaaaacaaaagtTCGGAAGCGAgtgttgagaaaaaaattaacgaagCTACTTTGCCCGTGATAATGGCTAATGCGTCTAACGTAAGCGATACGTCTACGCAAGAGAGTGATTTTTTAGATTCGACAATCGACGCCGTCGATGATCACAATCAATGTAAAGATGCGAAGTTATCTCAACTGCGCGAGTTGCTAAAGAAGAATTTCTCTATTAATTCTAGCGCGTCTGTTAACTCTGCTCCTAGAAGTAATATTTcagatgatatattaaaatctacatCCGATTGTAACTTTCCTCATAATTCTAACGCTTCTGAAAGTGCTTTTACGTCTATCGCTAAAAAGAATAACTCGACTAATATGAACGTCGAGTATAAAGAAGGTTCCGCTTCTGCGAGTCTAGCTATGCTCTCTAAGAGACAATTGTGCAATCCTTCGGAAAGACCGATTTCGACATTAATGGATAATGCCGGGCTCAACGCTAGAAGGAGAGTCAGTTTTGATCATCACGATCAAATCGCTTCTTACAGCAATCACGCGTCGCCTGTTTACGGATCCGGTCAACAGAGCGTTCCGCATAGTCCGACGTCGAGAGCTCAACAGTTCAATTTTATGCCAATATCGCCAGGACCCCTTTCGCCCGTAAACTCCAACAAAAATTCGCCCAACGTCTCATGCAAAAGAGTGACGAGTCCGACGAAATTAACGGGGATTCGATCAATTTGCACATCGCCCATTGCCAGTCCGTTCGTCAGTCCTCGAAACACGCCCGTCCCACGAGCAAGGGTAGGCTGTCAAGTGAAACCGGTGCCGAGCAAGCTGCAGATGAGAAAGCTCAACAAACTGGGAGCCAACAAGAGTTTACAATTGAACGATAAATTTCAGTCTTCGTTTTGTAATCAGTCGCTGAAAACGTCACAGAGCGAAATgggaaattttataataccaaACGAGCAGAGCACGGTACCGCGCTCTCCGAACTTTAACTCGAAAATAAGAAATTATCCCATGTCGGCGCCGCCATCGCCGAACATTTTAACTCCGAAATACAAACCTaattttatcaatcaaaacaaTATGGGTTCACAAGCGTCGTGTACAAGCGTCATTCAAATTTTGCCTGTGCATTCCCAGTATCAGACCGCTGATTCAGTGAGAATCGCGATGATGGACCGCGATCAACCGCAGCACGTTTCCAACGATCCTCTAGCACACGAGGTCAGCACGTTTTTCTCCGATAGTGCCAATTCTATGGAAGACACGGGTAATTCTATTCGCTCGCAATCTGTGCCTTTGCATCAAAACGCCGCAATCCAAGACGGAGGTCTTTACTTCGGACACGACCAATCCAACAATTCAAACGCGAATTTAAACTTCATGAGTTATAATAACACTCCTTGCAATTCCATTCCCGCCACGCCGGTTCCCAGAGAGTTTTGCGACTTTGGCAACGCTTTAAACGATACTTGCGAATCAATATCGAAAGCATGTTTAAACTCTGAAAATCTAGATAAGATATATAACGTTCTGGATTCAACAGTGTCTTCGAGTTTGGTAGATAGTGTCGTTAAGCAAAACGATATGATGCTGAATCAAGTGAACGGAAATAATCTCACTCTGCCTAATTTCTCGCAAGACGTCaccaacaataatataattgcacCACTGCTCACCGGAAATGTTAACATAAACGCAATGTCAAAACCGATGCAATACGCCGATTATAACGAATCCGAACCTAGCGTTTATTTGAAACGGTCCAACAGTGTCGAAATGGATAATATAGTGAACGAAAgcagattttttatatccagATCGGTTCCCAGTACGCCCCTGCCATGCGGCAAAACGACAATGCCGAATTTCGACTTAGTGCGAGCTAACCTCGAGAGCAGGAATCATTATCGAGATGAGTACAGCAGCACTGCATGCCGCAAACTGCTCTCGTCTAAATCTGTACCGTCCACTCCGCTCCTGACCGACGACCGGAACGTGTTCAGCTACAGTAACAGAGATTTCCTGATAAACGGCAACTCGGTCGATCAGAGCATATCGAACGCTTTCGGCGAGAAAGAGATTACTGGCGGCGAGTGCTTGCCGCACAAATTCTTGAACGACGGCGACACTCTCAAGGGGACCCGTCCGTGTTGGCCGACTTGTCGAGCTCGCCGCTACAGGAGATCGACATGGTAA
Protein Sequence
MDGTCDVMAAQRANKKSGAGAGALNARWRRSPSATAPRATVSADSAASAASAAAPQPMDADKIDRMQQVVEHTVSPESRQHIMQLLSQINLLNGTEKLLLYLKLPTGAPTIDPLKQPINPLGSRAEIHQTVMWIQTHLEVDPDVSLPKQDVYNEYVQYCTSTRMKALSTADFGKVMKQVYPCVKPRRLGTRGNSRYCYAGMRKRIKLEVPQLPDLDEKPKNAETPVAQNHLLVATSQLIREWAEKMLGFKFTNLQSLAHHLIEKDFVNNSSNSALVLSNSNAILDESYEVVSNDKSDDDPKLQQRGVIKQLKRKIQSQPQSSQPKIVSAPKKSKLHDSPEGCSNTLYRQIETPGKEYPIKREKDPLTPEALCYVPRVDESIKDYTLRKSTEVLNADISPPQNYSSNQSRECSLIKAVNLAPTMNPRNYNSPVVMNCTKNSVYKCDNEHMAPSVTHQPTNLSRNTYVHYNSDPYHHQFPHSSSNVPINLSHTNTDHDNVPKLYKPPVFNKSNEFATPVCENDTLNLSTTNRRDNWPPVQTHHPPPPPTKLPLPGKKMILETYNNENQINAQSYYNNQAIKPSLVSPGKISDALNRGEYLPKKMRATETFGGKLAAARLLHNAVTNVPINDPDKYNKTPIAKVPGEFSQSSPASSQPEVPITNLNAEKNQSGDSAADSKINDSYRQVSNYMPSTNLAESSVEESAPKVDLDKINLKAYNVKRVPRVYNKRNPKDLNKNMPDKPATRGRPRKKSLTKAKYTRRQPKNNNGKFSTCDHTKYPKRSSDSCCSLTDTINIKTGIICREKHSEILNRERVSSICNMDKHALDDYLINESSSQENEEELMKYFQHNADSLSNDENVKEIAPENDDADVSKSKNKSSEASVEKKINEATLPVIMANASNVSDTSTQESDFLDSTIDAVDDHNQCKDAKLSQLRELLKKNFSINSSASVNSAPRSNISDDILKSTSDCNFPHNSNASESAFTSIAKKNNSTNMNVEYKEGSASASLAMLSKRQLCNPSERPISTLMDNAGLNARRRVSFDHHDQIASYSNHASPVYGSGQQSVPHSPTSRAQQFNFMPISPGPLSPVNSNKNSPNVSCKRVTSPTKLTGIRSICTSPIASPFVSPRNTPVPRARVGCQVKPVPSKLQMRKLNKLGANKSLQLNDKFQSSFCNQSLKTSQSEMGNFIIPNEQSTVPRSPNFNSKIRNYPMSAPPSPNILTPKYKPNFINQNNMGSQASCTSVIQILPVHSQYQTADSVRIAMMDRDQPQHVSNDPLAHEVSTFFSDSANSMEDTGNSIRSQSVPLHQNAAIQDGGLYFGHDQSNNSNANLNFMSYNNTPCNSIPATPVPREFCDFGNALNDTCESISKACLNSENLDKIYNVLDSTVSSSLVDSVVKQNDMMLNQVNGNNLTLPNFSQDVTNNNIIAPLLTGNVNINAMSKPMQYADYNESEPSVYLKRSNSVEMDNIVNESRFFISRSVPSTPLPCGKTTMPNFDLVRANLESRNHYRDEYSSTACRKLLSSKSVPSTPLLTDDRNVFSYSNRDFLINGNSVDQSISNAFGEKEITGGECLPHKFLNDGDTLKGTRPCWPTCRARRYRRSTW

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-