Parg018971.1
Basic Information
- Insect
- Plebejus argus
- Gene Symbol
- -
- Assembly
- GCA_905404155.1
- Location
- FR989928.1:3458701-3463106[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.2 15 6.7 0.7 1 23 69 92 69 92 0.90 2 18 0.25 19 6.4 0.0 2 23 119 141 118 141 0.92 3 18 0.024 1.8 9.6 2.8 2 23 164 185 163 185 0.96 4 18 0.3 23 6.1 1.6 1 23 189 211 189 211 0.89 5 18 8.6e-05 0.0064 17.3 0.3 1 23 216 239 216 239 0.96 6 18 1.8 1.3e+02 3.7 1.4 2 23 246 268 246 268 0.90 7 18 0.01 0.77 10.8 0.2 1 23 275 298 275 298 0.97 8 18 1.5e-06 0.00011 22.8 2.9 1 23 304 326 304 326 0.96 9 18 0.0039 0.29 12.1 2.9 1 23 332 354 332 354 0.98 10 18 0.058 4.4 8.4 3.5 1 13 360 372 360 374 0.91 11 18 0.07 5.3 8.1 2.4 1 23 441 464 441 464 0.90 12 18 0.76 57 4.9 0.1 2 23 491 513 490 513 0.94 13 18 0.0038 0.29 12.1 3.0 1 23 561 583 561 583 0.97 14 18 0.0089 0.67 10.9 0.4 1 23 588 611 588 611 0.93 15 18 4.5e-05 0.0034 18.2 2.0 2 23 651 673 650 673 0.96 16 18 0.0012 0.094 13.6 6.5 1 23 679 701 679 701 0.98 17 18 2.8e-05 0.0021 18.8 0.8 1 23 707 729 707 729 0.98 18 18 0.00013 0.0099 16.7 3.4 1 23 735 758 735 758 0.97
Sequence Information
- Coding Sequence
- ATGACTGGTACAGTTTGGACAAAATCGGAAGAAGGCAGCAGCAAAGACAAAATAAAAGAAGAGGGTAAATCTATAAAATTTATTAAAAAAGAGAATGGGGATTATTTTGATGGTATGAAAGAACTGAAAAAACATTATCATAACGTACGCGTAGTACTTAAAAGCACAAATGCTACGCCGATAAGATCTTATACTGGTATAGGATATAATTGTTGTTTTTGTGACACGCAGGCTATTGATCCAGCCGATTTGAAACGTCATAATTTAGAAAATCACGATGATTTTGTGCACGCAAGTTTTATGACGAAAATTGGTTTGAAATCGTTTCATGTTAAACTGGACATAACGGGCTTGCAATGTAAACAGTGTGGCGAAAAGGCTGACGATTTAGAGGACATTGTAAGACATCTTATACAAGTACACGATAAAAAGATTTGCACAGATATACCGAATCGTATGATCCCTTTAAAATTTGACGCAAAAGAGCTGAGATGCTACAAATGCCACAATGCCTTCTCTAATTTCAAAACTTTAGTGCTGCACATGGGGAAACATATACGAAATCACGAGTGTGAAGTTTGCAACGCAGGTTTCATATACCCATACCAACTGAATTGTCACTCCTTGAATCATAAATTAGGTACATTCGAATGTAGCGAATGTAAAAAAGTGTTTGACACAGTCGTAAAATTGAAGTCGCACGTGAGAGCTGTACACTCTAAGGTTCATCTTAACAAGTGCGGGTGTTGTGGTGAACTGTTCAATGATTATAATCAGAAAATGAAGCATATGATGGAAGTTCATGGGTTCGTCAACACCAACTACAAGTGTGCCGCCTGCGATCGAGAGTTCTGGAATCCCAAAGCGTTAAGAGTACACAGACAGAGGGATCACTTGATGGAAAGGAGACACGCTTGTAACGAGTGCGACAAGAGGTTCTATTCCTCGTCAACATTAAAAATGCACATGCTGACCCACACAGGGATTAAGGAACACCAATGTGAGGTGTGTTTGAAATACTACGGCAAGAAAACAACGTTGCGACAGCACCTGCGAATACACGCCAACGATAGGAAGTACAAATGCGAGCACTGCGGACAGAGCTTCGTACAGAAATGTTCACGGGTTATCATCCTCAAACTTGAAAATACAAGTAAAAAGGAAAATGAGAACAAATCTATAGAAATTAAGAAGCTTATTAACTTTAAGAAATCGAGCACATTAAGAAACGAAAGTGAATTAGATAAACATAGGCACAATTTAAGTGTGATATTGGCATCGTCGAACGCTACTCCTATTCGCTGTCAAACTGGTTTAAGTTACCGATGTTGTTTCTGTGAGGAACAGTTTTACAGCCCTGTCGATCTTAAGATGCACAACCTAGAATTTCACGCCGGTTTTGATGAAAGACATTTTTTAACACGCGTTAACGCCGCCCGATTCGTTGTGAAACTGGATATAACGGGCTTAACTTGTGATCACTGTTTAGAACCGATGGATTCCCTCGAAAATTTGATCGATCATCTTCAAAATATTCATAAAAAATTTATCTACAACGACATCCCTAAACAGATAATTCCTTTTAAATTGGATAACGAAAACTTTACGTGCTGCATTTGCTTGAGCCAATTCAGCAGATTCAAAATATTAGTGACGCATATGCACGTGCACTTCAGGAACTACTGCTGCGACGTGTGCAACGCCGGCTACGTGACCCGCAGTCATCTTCAATTGCATAGCACAACACATAAGCTAGGATCCTTCAGTTGCGGCCAATGCTCGAAAGTGTTTAAGACCGTAGCGAATAAAATCTCACACGAAAACTACGCTCACGGTAGCGAGAAGCAGAGATTGATGAATGTGTGTCCCTTCTGCAGGGAGAGGTTCAACTGTGGCAGAAAACGCGACCGACACGTGCAACAAGAGCACGGCTTCCTTCACCAGAGTTTAAAATGTCAGGCTTGCGATAAGACTTTCTCGCATCAGGCCGCTCTGACGACACATCGGCAGAGGGATCATCTGATGCTGAAAAGGTTTAAATGCACGCAGTGCGATAAACACTTCTTCACCGGACACGAACTGAAAACGCACATGGTGAAGCATACGGGAGTGAAGGAGTTCGTCTGCGAAGTGTGTCACAAAGCTTATGGACGCAGGAAGACCTTGATCGAACACTTGCGTATTCATGCCGATGACAGGCGCTTCAAGTGCGAACATTGCGGGCAGGCTTTCGTGCAGAAGTGCAGCTGGCGTGGCCACATGCGCGCCAAGCATGGCGAAGATGTGTAG
- Protein Sequence
- MTGTVWTKSEEGSSKDKIKEEGKSIKFIKKENGDYFDGMKELKKHYHNVRVVLKSTNATPIRSYTGIGYNCCFCDTQAIDPADLKRHNLENHDDFVHASFMTKIGLKSFHVKLDITGLQCKQCGEKADDLEDIVRHLIQVHDKKICTDIPNRMIPLKFDAKELRCYKCHNAFSNFKTLVLHMGKHIRNHECEVCNAGFIYPYQLNCHSLNHKLGTFECSECKKVFDTVVKLKSHVRAVHSKVHLNKCGCCGELFNDYNQKMKHMMEVHGFVNTNYKCAACDREFWNPKALRVHRQRDHLMERRHACNECDKRFYSSSTLKMHMLTHTGIKEHQCEVCLKYYGKKTTLRQHLRIHANDRKYKCEHCGQSFVQKCSRVIILKLENTSKKENENKSIEIKKLINFKKSSTLRNESELDKHRHNLSVILASSNATPIRCQTGLSYRCCFCEEQFYSPVDLKMHNLEFHAGFDERHFLTRVNAARFVVKLDITGLTCDHCLEPMDSLENLIDHLQNIHKKFIYNDIPKQIIPFKLDNENFTCCICLSQFSRFKILVTHMHVHFRNYCCDVCNAGYVTRSHLQLHSTTHKLGSFSCGQCSKVFKTVANKISHENYAHGSEKQRLMNVCPFCRERFNCGRKRDRHVQQEHGFLHQSLKCQACDKTFSHQAALTTHRQRDHLMLKRFKCTQCDKHFFTGHELKTHMVKHTGVKEFVCEVCHKAYGRRKTLIEHLRIHADDRRFKCEHCGQAFVQKCSWRGHMRAKHGEDV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00164632;
- 90% Identity
- iTF_00164632;
- 80% Identity
- -