Aage006804.1
Basic Information
- Insect
- Aricia agestis
- Gene Symbol
- -
- Assembly
- GCA_905147365.1
- Location
- LR990259.1:19970679-19973001[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.035 2.5 9.2 2.0 2 23 12 33 11 33 0.94 2 15 0.0025 0.17 12.8 0.3 1 23 37 59 37 59 0.95 3 15 2.6e-05 0.0018 19.0 0.3 1 23 64 87 64 87 0.96 4 15 0.0099 0.7 10.9 0.2 1 23 123 146 123 146 0.97 5 15 1.2e-06 8.2e-05 23.3 2.0 1 23 152 174 152 174 0.96 6 15 0.0052 0.37 11.8 2.6 1 23 180 202 180 202 0.98 7 15 0.049 3.5 8.7 3.5 1 13 208 220 208 222 0.91 8 15 0.1 7.1 7.7 1.7 1 23 289 312 289 312 0.90 9 15 2.8 2e+02 3.2 4.5 1 23 383 405 383 405 0.97 10 15 0.0017 0.12 13.3 2.4 1 23 409 431 409 431 0.97 11 15 0.0074 0.52 11.3 0.4 1 23 436 459 436 459 0.93 12 15 5.2e-05 0.0036 18.1 0.8 2 23 499 521 498 521 0.96 13 15 0.00027 0.019 15.8 4.3 1 23 527 549 527 549 0.98 14 15 0.00025 0.018 15.9 0.2 1 23 555 577 555 577 0.98 15 15 0.00011 0.0077 17.1 3.4 1 23 583 606 583 606 0.97
Sequence Information
- Coding Sequence
- ATGATCCCTTTCAAATTCGACGCAAAAGAGCTAAGATGCTACAAATGCTACAATACCTTCTCCAATTTCAAAACTTTAATGCTGCACATGGGACAACATATACGAAATCATGAGTGCGAAATTTGTAATGCAGGTTTCATATACCCCAACCAACTTAATTCTCACTCTTTGAATCATAAATTAGGTACATTCGAATGTAGCGAATGTAAAAAAGTGTTTGACACATTAGTAAAATTGAAATCGCACGTGAGAGCTATACACTCTAAAGTTCATCTCAACAAGTGCGGGTGTTGTGGTGAACTGTTCAAGGAGTATCTTCAGAAAATTAAGCATATGATGGAAGTTCATGGGTTCGTCAACACCAACTACAAGTGTGCCGCCTGCGATCGAGAGTTCTGGAATCCCAAAGCGTTAAGAATACACAGACAGAGGGATCACTTGATGGAAAGGAGACACGCTTGTAACGAGTGCGATAAGAGGTTCTATTCCGCGTCAACGTTAAAAATGCACATGCTGACCCACACGGGTATTAAGGAACACCAATGTGGGGTGTGTTTGAAATACTACGGCAAGAAAACAACGTTGCGACAGCACCTGCGAATACACGCCAACGATAGGAGGTACAAATGCGAGCACTGCGGACAGAGCTTCGTGCAGAAATGTTCACGGGTTATCATCCTCAAACTTGAAAATTCAAGTAAAAAGGAAATTGAGAACAAATCTATAAAAATTAAGAAGTTTATTAACTTTAAGAAGTCGAGCACGTTAAGAAACGAAAGTGAATTAGATAAACATAGACACAATTTAAAAGTGATACTGGAATCGTCGAACGCTACCCCTATCCGCTGTCAAGCTGGCTTATGTTACCGATGTTGTTTCTGTGAGGAACAGTATTACAGCCCTGCCGACCTTAAGATGCACAACCTAGAATCTCACGCCGGTTTCAATGAAAGCCATTTTTTAACACGCGTCAATGTCGCCCGATTCGTCGTGAAACTGGACATAGCGGGCTTAATTTGTAAACTCTGTTTAGAACCGATGGATTCTCTCGAAAGTTTGATCGGTCACCTTCAAAATATTCATAAAAAGATTATGTACAACGACATCCCTAAACAGATAATTCCGTTTAAATTGGATAGCGAAAACTTTACATGCTGCATTTGCTCGAGCCAATTCAGCCGATTCAAAATATTAGTGGAGCACATGCACGTGCACTTCAGGAACTACTGCTGCGACGTGTGTAACGCCGGCTACGTGACCCGCAGTCATCTTCAATTGCATAGCGAAACACATAAGCTAGGATCCTTCAGTTGCGGCCAATGCTCGAAAGTGTTCAAGACCGTAGCGAATAAAATCTCACACGAAAACTACGCACACGGTAGCGAGAAGCAGAGATTGATGAACGTGTGCCCCTTCTGCAAAGAGAGGTTCAACTGTGGCAGAAAACGCGACCGACACGTGCAACAGGAGCACGGCTTCCTTCACCAGACTTTGAAATGTCAGGCTTGCGAGAAGACTTTCACGAATCAGGCCGCTCTGACGACACACAGGCAGAGGGATCATCTGATGCTGAAAAGGTTTAAATGCACGCAGTGCGATAAAAACTTCTTCACCGGACACGAATTGAAAACGCACATGGTGAAGCATACGGGGGTGAAGGAGTTCGTCTGCGAAGTGTGTCTCAAAGCGTACGGACGCAGGAAGACCTTGATCGAACACCTGCGTATACACGCCGACGACAGGCGCTTCAAGTGCGAACATTGCGGGCAGGCTTTCGTGCAGAAGTGCAGCTGGCGTGGCCACATGCGCGCCAAGCATGGCGAAGATGTGTAG
- Protein Sequence
- MIPFKFDAKELRCYKCYNTFSNFKTLMLHMGQHIRNHECEICNAGFIYPNQLNSHSLNHKLGTFECSECKKVFDTLVKLKSHVRAIHSKVHLNKCGCCGELFKEYLQKIKHMMEVHGFVNTNYKCAACDREFWNPKALRIHRQRDHLMERRHACNECDKRFYSASTLKMHMLTHTGIKEHQCGVCLKYYGKKTTLRQHLRIHANDRRYKCEHCGQSFVQKCSRVIILKLENSSKKEIENKSIKIKKFINFKKSSTLRNESELDKHRHNLKVILESSNATPIRCQAGLCYRCCFCEEQYYSPADLKMHNLESHAGFNESHFLTRVNVARFVVKLDIAGLICKLCLEPMDSLESLIGHLQNIHKKIMYNDIPKQIIPFKLDSENFTCCICSSQFSRFKILVEHMHVHFRNYCCDVCNAGYVTRSHLQLHSETHKLGSFSCGQCSKVFKTVANKISHENYAHGSEKQRLMNVCPFCKERFNCGRKRDRHVQQEHGFLHQTLKCQACEKTFTNQAALTTHRQRDHLMLKRFKCTQCDKNFFTGHELKTHMVKHTGVKEFVCEVCLKAYGRRKTLIEHLRIHADDRRFKCEHCGQAFVQKCSWRGHMRAKHGEDV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01217757;
- 90% Identity
- iTF_01217757;
- 80% Identity
- -