Parg004138.1
Basic Information
- Insect
- Plebejus argus
- Gene Symbol
- L
- Assembly
- GCA_905404155.1
- Location
- FR989935.1:7234133-7243687[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 1.4e-06 0.00011 22.9 1.7 1 23 87 109 87 109 0.99 2 18 0.61 46 5.2 5.8 1 23 115 137 115 137 0.97 3 18 8.2e-06 0.00062 20.5 4.1 1 23 143 165 143 165 0.99 4 18 2.5e-05 0.0019 19.0 0.1 1 23 171 193 171 193 0.98 5 18 3.8e-05 0.0029 18.4 0.1 2 23 209 231 208 231 0.95 6 18 5.8 4.4e+02 2.1 0.1 9 23 262 277 258 277 0.93 7 18 0.29 22 6.2 0.0 3 23 332 352 331 352 0.97 8 18 0.16 12 7.0 0.0 3 23 367 387 366 387 0.91 9 18 0.00018 0.014 16.3 1.0 1 23 395 418 395 418 0.94 10 18 0.014 1 10.4 0.1 1 23 423 446 423 446 0.93 11 18 4.4e-05 0.0033 18.2 0.3 1 23 506 530 506 531 0.96 12 18 0.00019 0.014 16.2 0.1 2 23 585 606 584 606 0.96 13 18 0.16 12 7.0 0.0 1 23 614 636 614 636 0.97 14 18 7.7 5.8e+02 1.7 0.4 2 23 644 665 643 666 0.89 15 18 8.7 6.6e+02 1.5 0.0 3 23 673 693 672 693 0.94 16 18 0.84 64 4.7 0.3 1 23 740 762 740 762 0.94 17 18 0.0052 0.39 11.7 0.1 1 20 770 789 770 792 0.95 18 18 0.039 2.9 8.9 0.6 1 23 799 821 799 821 0.94
Sequence Information
- Coding Sequence
- ATGAGTGCCCAAGTTTTTGCGCAGTACACAAGAGCACTCACTATTCCTTTTACTGACCTACTTTTTACATGCCCATCCGACGCATGGATCATCTTGCTTGCCAGACAATCAGAAGCGCTGGGCAGCGTGGGCAGCACTGCCGGGAGCTCCTGGCCGTCATCGACGCCCGAGCCGTCGCCCTCGCCCTCTTCGACGCCGACGTCCGCGGACGCCGACGCCGACCCGCCCTTCACGCTCGGCGCGACCGAGCACACGCCCTATCAGTGCCAGTTCTGCGATAAGGCCTTCCCGAGACTATCTTACCTGAAGAAGCATGAACAGACGCATTCAGATCAGATGCCATTCCGCTGCGAGTTCTGTTCCCGGCTGTTCAAGCACAAGAGGTCCCGGGACAGACACGTCAAGCTTCACACCGGGGACAGGAAATATCGCTGCGCGCACTGCGAATCTGCTTTCTCCAGGAGCGATCACCTGAAGATCCATATGAAGACGCACGACAACCAAAAGCCGTTTCAGTGCACGGTGTGCAACCGCGGGTATAACACGGCGGCCGCGCTGACGTCACACATGCAGGGACACAAGCGAGACAGGGAGGGCCGGGAGGTGGACAGGCGACGAGCCCTCCGCTGTTTGAGATGCGGGGAGGGGTTCCGAAGATCAGATATGCTGCAGGCTCACATGGCTAGTGCTCATGGAATAGAAACCACATCAATGACTCCCCCTCGTAGAGTCGCGTCCCAGCCACCGCCCACTTTACTTGCCTGCATCTACTGTACAAGGGATACTTTCACGAGTATGGAACAGTTGCAGTTACACGTGCGCGCAGCTCACTCTGCTATTTTAAACGGAGAGGCACCAGCTCAATTTACAGTAGACCAGCCCACTCCTACGGATTTAAGCAGAAGAGGAACCGACGAACCGATCGCTAAGCGCCCACGATCGAGCACCGGATCTGCTACACCGAAAACAAATCTCTCACCAAGTACGCTACTCTGCAACCAATGCGATGCTGCCTTGCCAGATTTTGAGGCATTTCGAGCACATCTGAAGGGGCATCTCGAGGAAGGAGGCGAACTAAATCGCACCAGCCCGAACCCTTGCGTTCATTGCGGTGCTACTTTTGCCGACGCAGCCGCTTCCGAGAGACACTTAGCCGCTCATTACTTAGCCGTATCCTGTGAATACAATTGTCACAGCTGCGCGCGCAGCTTTCCTACGTCCGAAGATCTTCAAAAACATTTACTAGAGATGCACACTCACCACATGTATCGATGCTCACTTTGCAAAGAGATATTTGATTCGAAAGTTTCTATACAGGCTCACTTTGCAATAGCACACACTGGTGAAAACAAAGTATGGGTATGTCGATCGTGCGGTAGCGCTGGTGGAGCTCTACGCACGGAGGCGGAGGGAGCGGCTCACGTGCGGGCGAGGCACGCGGCGTCCAGATGCGCTTGTGGTGCGGTACTACCAGGGGCCAGGGCGCTAAGGGCACACACCGCTGCCCATCATGCCTACCGGTGCCCTGTACCCAACTGCACTGAATCCTTCGCTGTCCAGTATTTACTTGAAAGGCACATGCAGGCTCATCACGCTATTGGGCAAACGGGTGTAAACGGCGACCTATCTAGAGTGAAACGGGGTGAAAATAACAATGGACTGGAGGATGACAATTGTTCGCCCTGTATGCCGGAAGGCAACGGTCCGGTGTCCATAGACGATAGGCGACGTAAGAACGGCGCAGTGGCTCTCCAGTGCGCCTACTGCGGGGAGCGCACGCGCAGCCGCGCCGAGCTCGAAGCCCACACCCGCGCGCACTCTGGTACCGCCGCCACCCGCCACAAGTGCCTCATATGTGATGAAATCCTTCCCTCCGCTGCGGTGCTCGCTGAGCATAAATTGACGCATTGTAAGGTAATAGCTGGGGATGTATGTGCACGATGTCGCTCTCGTCTTCCTTCGGAGGAAGCCTTCCTGAGTCACATGGCCCGCCATCACCCGACTTTACCAGCGCCCTGCGTGATATGCCGCCAGACTTTAGCATCGGAGGGCGAAGCACGCTTACACGCTAGATTCCACCTGCGTCCGAACGAAGACGAGCAGCGCTGTGCGATATGCCTCCGAGCTCTGACTGACAGCGAAGCCGGGGACGGAGCTCGGGCCTGCTCGTCGTGTTACGCTCGCCACGCCACTCCCCGACCTCCTCCCCCCGCAGACCACGATTGCCGACTGTGCAGACGAGCCCTGGGCTCCCCGACGCGACTGCAAGCTCATCTCATCGAGCACACCTTCGCCGGTATCGGGGCGTTCACCTGCTACTTGTGCTCGGCGATGTTCACCAGCGCCGCCGGCCTGCAGCGCCATCTACCGGAGCACGCGGCCGCCCCGCGACCCTACGACTGTAATCGGTGCGGGCTGAAGTTTTTCTTCCGAGCCGAACTGGACAACCACGCGTTCGTGCATTTGGAGGAGGCCGAAATTGCTCAGAGAGCGTTCTACGAGGCATACGCTCGGGGTGCCGTTTCCGCGTGGGCGGCTCTCCAACCCCCGGAGCCTCCGCCGCAACCCCCGGTAGCGTCGCCCTCGCAACCGGAGGTTCCGGTGAAGCAGGAACCGGAAATAAAAGAGGAGCGCCAGGACGAGTACATAGAAGTGTCCTCGCCGCCTCCGCCGCAGGAGACCCCGCCCAGCCCGAAGCCCGTCGTCAAACAGGAGAAGCCCGATGAGGAATGA
- Protein Sequence
- MSAQVFAQYTRALTIPFTDLLFTCPSDAWIILLARQSEALGSVGSTAGSSWPSSTPEPSPSPSSTPTSADADADPPFTLGATEHTPYQCQFCDKAFPRLSYLKKHEQTHSDQMPFRCEFCSRLFKHKRSRDRHVKLHTGDRKYRCAHCESAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQGHKRDREGREVDRRRALRCLRCGEGFRRSDMLQAHMASAHGIETTSMTPPRRVASQPPPTLLACIYCTRDTFTSMEQLQLHVRAAHSAILNGEAPAQFTVDQPTPTDLSRRGTDEPIAKRPRSSTGSATPKTNLSPSTLLCNQCDAALPDFEAFRAHLKGHLEEGGELNRTSPNPCVHCGATFADAAASERHLAAHYLAVSCEYNCHSCARSFPTSEDLQKHLLEMHTHHMYRCSLCKEIFDSKVSIQAHFAIAHTGENKVWVCRSCGSAGGALRTEAEGAAHVRARHAASRCACGAVLPGARALRAHTAAHHAYRCPVPNCTESFAVQYLLERHMQAHHAIGQTGVNGDLSRVKRGENNNGLEDDNCSPCMPEGNGPVSIDDRRRKNGAVALQCAYCGERTRSRAELEAHTRAHSGTAATRHKCLICDEILPSAAVLAEHKLTHCKVIAGDVCARCRSRLPSEEAFLSHMARHHPTLPAPCVICRQTLASEGEARLHARFHLRPNEDEQRCAICLRALTDSEAGDGARACSSCYARHATPRPPPPADHDCRLCRRALGSPTRLQAHLIEHTFAGIGAFTCYLCSAMFTSAAGLQRHLPEHAAAPRPYDCNRCGLKFFFRAELDNHAFVHLEEAEIAQRAFYEAYARGAVSAWAALQPPEPPPQPPVASPSQPEVPVKQEPEIKEERQDEYIEVSSPPPPQETPPSPKPVVKQEKPDEE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01437318;
- 90% Identity
- iTF_01178881;
- 80% Identity
- -