Basic Information

Insect: Platyscapa corneri
Gene Symbol: Rreb1
Assembly: GCA_018907185.1
Location: JACCHW010000001.1:5342424-5350367[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0062 2.1 10.7 0.1 1 23 39 61 39 61 0.96

2 16 0.00025 0.085 15.1 0.1 1 23 77 99 77 99 0.97

3 16 1.8e-07 6e-05 25.0 1.3 1 23 105 128 105 128 0.98

4 16 0.024 8.2 8.8 0.1 1 23 226 250 226 250 0.95

5 16 0.018 6.2 9.2 2.7 2 23 256 278 256 278 0.95

6 16 1 3.5e+02 3.7 0.5 1 19 334 352 334 354 0.90

7 16 0.052 17 7.8 0.1 1 23 469 491 469 491 0.96

8 16 2e-05 0.0066 18.6 0.3 1 23 500 522 500 522 0.98

9 16 0.00097 0.32 13.2 2.8 1 23 528 551 528 551 0.97

10 16 0.00036 0.12 14.6 3.0 1 23 944 967 944 967 0.97

11 16 0.00051 0.17 14.1 0.1 3 23 1259 1279 1257 1279 0.97

12 16 0.71 2.4e+02 4.2 6.5 1 23 1285 1308 1285 1308 0.97

13 16 0.0032 1.1 11.6 2.2 1 23 1347 1371 1347 1371 0.97

14 16 4.3 1.4e+03 1.8 2.5 1 23 1461 1484 1461 1484 0.86

15 16 0.0087 2.9 10.2 0.4 2 23 1537 1558 1536 1558 0.94

16 16 1 3.5e+02 3.7 8.2 1 23 1564 1586 1564 1586 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0062	2.1	10.7	0.1	1	23	39	61	39	61	0.96
2	16	0.00025	0.085	15.1	0.1	1	23	77	99	77	99	0.97
3	16	1.8e-07	6e-05	25.0	1.3	1	23	105	128	105	128	0.98
4	16	0.024	8.2	8.8	0.1	1	23	226	250	226	250	0.95
5	16	0.018	6.2	9.2	2.7	2	23	256	278	256	278	0.95
6	16	1	3.5e+02	3.7	0.5	1	19	334	352	334	354	0.90
7	16	0.052	17	7.8	0.1	1	23	469	491	469	491	0.96
8	16	2e-05	0.0066	18.6	0.3	1	23	500	522	500	522	0.98
9	16	0.00097	0.32	13.2	2.8	1	23	528	551	528	551	0.97
10	16	0.00036	0.12	14.6	3.0	1	23	944	967	944	967	0.97
11	16	0.00051	0.17	14.1	0.1	3	23	1259	1279	1257	1279	0.97
12	16	0.71	2.4e+02	4.2	6.5	1	23	1285	1308	1285	1308	0.97
13	16	0.0032	1.1	11.6	2.2	1	23	1347	1371	1347	1371	0.97
14	16	4.3	1.4e+03	1.8	2.5	1	23	1461	1484	1461	1484	0.86
15	16	0.0087	2.9	10.2	0.4	2	23	1537	1558	1536	1558	0.94
16	16	1	3.5e+02	3.7	8.2	1	23	1564	1586	1564	1586	0.98

Sequence Information

Coding Sequence: ATGAAATACTCGTTCAGACTGACTGCTGAGACTGGACCTGATCAGCGCGACGACTGCAACGAGAATCAAACGGATGTTGCATCATCACCACTGGTCGATCAGCCGGAAGGTACTCACCCGTGCCCGGCTTGCCCACTCGTACTTGCAAGCTCGCGCGACTTGACAAATCATTTGCGAGGCCATAATTCACCTCGTAGCACCAGCGATTGCAGCGGCGAGGAAGTTGACTACGCTTGTGGCGTCTGCCACAAGGTCCTTAGTTCTGCCAGTTCTTTAGACCGCCACGTTTTAGTACATTCTGGAGAGAGACCATTCAAGTGCAAGTATTGCGACATGGCATTTACAACCAACGGGAATATGAACAGGCACTTGCGAACGGCTCACAGAACTGTTTCACCCTCACACAGTTGTACCGATTCTGAAGGTAGCTGTGATTCCGAAAGGCCATTAAAGCGTCGGCTTATTCAAGAGGAATACAATAATAACGAAGTCGCCAAGAGAAACTCTCCAGAGCTCATAGAAGATGACAAGCGTTCCAGGTCGCCAGAGCACATAGGCAAGCGTAAATGTCCGGACTTCGTGGATGAGGTCGATAGTCATCGCAGGCATAAAATTCTATTAGGCAATGCCCGAACGGAAATTCGCAGTGTTTATACAGAACCTGTACAAAATACTTACAATTGTACCGTCTGTGGTAGACAAGACTTTGCTACGAGTGCTTTATTGGAAACCCATCTAGAAAGAAGTCACCCAGAGATTCCGGCTAAGTGTGAAAGCTGTAATCTTTCTTTCAAAAACCATCGGGCACTTAATCTTCACCGCTTTATGATACACTTCAGCGAACACGGGGCTGCTGCAGTTACTCGGAATCTCCGCAATTCTGTTGTTGGTTTCAATGATCTTACTTTTGTCGATTTCTCATCGGATAAATTTCCCGCGATTGCCCGCGCCGTTTGCGAGCAGTCACTCCATCGACCTGCTTCTGGCGAAACCCCTAGGTACCAATGCTCTAAGTGTTTGCGAGCTTTTCCATGTCGTTCAGCATTGGATGCTCACGAAACAGATTGCGGACTAATACCTATAGATGTAGCTGATCACAGAATGCATGATGAACAGTCCATAAGAGATGACTTCTTCGCTGGACTCGATCTTCAAAATAAAGCGGCCTTAGCTGAAGCGAAAGAAGGCAAAGATCTCGCTGACATTCAGAGCATTATTTCCGTAACATCTGGCCCGATCCTACAGAACTTTTCGAGATCAGATACTAGTACCCCAGATAATTGCAAAATCAAGCAAAGCCTTGGTTCTTCGGGTTCCTCTGGTACGCCTTCCTCGGAATATCACGAGGAAGAAGCTCAGGATGCATTTGCGGCTGAGTTCAGAAAAATGAAGCTAAAGGGTGAATTTCCATGTAGGCTTTGCACAGCAGTTTTTCCAAATTTACGAGCTCTGAAAGGCCACAATCGTGCACACATGGGTGTGGGGGCAGGCATGCCCTATCCCTGTAATATGTGTCCTTACAGCAGTACTGACAAGGCCACGCTGGTCAGGCATTTAAGATCACATAACGGTGACAGGCCTTACGAATGCTCGCTCTGTAATTATGCCTTTACGACCAAGGCTAACTGCGAAAGGCACGTAAGGAATCGTCACGGCAAGCTGTCAAGAGAAGAAATTAAAAGTGTACTTATTTATCATCCAAGTGAAGATTCGACGAATGACAGTAGCTTAGAGAGAAGTTCACCTCGAGGATTGGTGAGAGACGATGTTCGCAAGACTTTAATTTACTCTAACGAACGAGACGAACTAACTTCACAGCAGTTGCTTTATCCTACAGAGATTAGGATTAAGGATGAAACAAAACTTCGTCAACCTGGATTAGCAGGTTTGACAGGGCTCCATGGAGTCGATGTCGGTCATTACGATAAGAATGACGTATTTCCACGACCATCGACGATCCAGCCCCTAGAACTGACTTACAGAAACGATGAGTTAGACAAAGCTCAACAAATTAATATGAAGCACGTAGATGATGACATAGATTCGAGGTCTTCAGATGGTAGCGTGTCTCTAGTCAGTGAAACCAAAGCAGACGCACACCAAAGAATTCAAGCCAGCCCGATGGACCTGAAAATATTAAACATGAATGAAGCATCAACCATAGAAGGCAGTGGTGTTGAAGATGCACCTCTTGATTTATCTATGGATGTGCTTGATTTAAGTAAAAAGGCTACGGCTGCCGCCGCAGTTGTCGCAGCAATTAAGGATAACGAAGGTGGAGATATAAATGGAAATGCCGAAGATCTTAGCAACAACCACAAGGATTTGTATAATACAACAAATCAGTTATTACTTACGCAAGCCTTACTTAAGGCTGGACGAGTCGGCAGTCAACCTTCGTCTTTAGAAACTTTCTATGCAAACGCTCATATGATTTATCGTAACTTTGGTACATTTCCCGGTGTCGGAGCCGGTATTCTTCAACCGTATCTTTTTAATCCACATCTTTTTAGTCAAGATTTTGGAATGAAAGATCGATTACAAAAAGAATTGGTTCGAGGTCTTCAAACTAGTGGAGGAACTCTTTTAGAACCTCCGACTCCGGGATTTCCAGCAACTTTTTCTCCCGCACGAAATCCTCCACCAAATCATAACGTCAATGAGCAAACTGAATATGCTAACATTATATCCTCAAAGGTGATAAATAAAAGTATTTCACCTCGTGAAAAAATAGAAACTTCACCGTCGGCCAATTCTGTGAAAATGGTGATTAAGAACGGTGTATTGATGCCGAAGCAAAAACAGCGACGATACAGAACCGAACGCCCATTTACATGTGAGCACTGCTCCGCCAGATTTACATTGCGAAGTAATATGGAGCGTCATATAAAACAGCAACATCCACAACATTGGAGTCAGCGCCCTAGAGGAGGACATTCAACTAGAGGAAGACCACCAACAAATCCACCCACATTACTGCAGAATTTGGGACAGCCCTCCTCTCATCAGCAGATTTCTCAGTCTTATTCTAATTTATTACCAAAACTTGGACAGTCATTAACGCCTGATTATGGTAAGCATGCAATCTCTGATCAGGTTAAGTACGCCATATTAGCCCAACAATTGAAGGGTAATAAGCACGAAGAAAACGATACGGATGAGGAGCTTATTATTGATGAAGAATCTGCTAATTTAGAAAAGGAAGCAAGAGAAGGTAATGCAAAAGAGCCATCTCAGAGAACTCTCAGTCTTTTAAGAGGTAAATTAGAGGCTAATATTGAATGTAAAGGAACTGACAATAGTGAAATAAAAGAACTAAAACATTCGAATGAACAAAAAATAAAAATTAAAGAAGAAATTGAAACTAATGATGATTCAAAAAGTTATGAGAATAACATTTTTAAAAAATCTGATGAATATATTGGATCTGATAACGAAGAAACAGCAAATGAAATTCGTCAAACATCAATAAAATCAGATTTGAAAATAAGCGTGAAAGAAGAACATAACGAGAACGAAGATTTAGCAAGTGTCTCTGAAATTTTAGATAACGCGTCTCAACACTATCAACAATTTCAGTCTCAGTACATGAGTGACGAGGAAGGCTTAGTAGCTTCAACGAGCGATTGTAATCAGTCGGGCAGCGATGAGAAGTCTGATTCAATCAACTCGGGAAATTCAGGCAATTCTTCAACTTCAAAAAAAAAGAAAAAAATGAAAAAGAAGAAAAAGAAGAAGAAGTCTGCTTATTCAATGGCACCTAATCGAGTAATTTGTCCTTACTGTGAACGACCTTTTCCTTGGACGTCTTCACTCAGACGACATATTCTGACACACACTGGGCAAAAGCCATATCAATGCATGCACTGCTCTCTACTTTTTACAACTAAATCTAACTGCGATCGTCACTTATTGAGGAAACACAAGGCAAACGCCAACAAAATACGACGGGCACGTAGTACATCGTCACCTGAGGCTCAGGAAGTGGTAACTAATAACAATAGTCAGTTCTCTATGAGAAATGTACCAGAACGGCCGTACAAGTGCAATCAATGTCCGAGCTCGACATTTTCCACACTCGGCAATCTAAAAAAACATAGATCAACGAAACATGCACGCAATACTAAATCAAGACCTGAATCACCGTCCAGTGAACCTCATAACAATTGTCCGCAGGACTGTCCAAAACAAAATGATCAAAGTGGATATGAGAGTCAGTCATCAGGAGTCTCTGAAAATTTAGAAAACAACAATTCAACAGCTATCAATACGTCAAAAACGCTTGTGAATTCCAACAATGTCTCGTTGACAACAAACGAGAGTTCTAGGTCGAGGAGAACGTCACCTAGGTCGTCCCCTGGACCCACCACTGAGGCACCCTTCAAGTGTCATTTGTGCGACAGCGGTTTCGCCGAGAGACAAGACTGCCTCGAACATATTAAGGACAACCATGAACGGTCATATGAGATGCTTGTAGCCAAAGGTGCACTCGATATGGATATCGATGGGCATGAAGAACAGATGACACCAATACCACCGCCACCGCAGCATCCCAGTGATGGCGAGGAGAGACGTGGAAGGTTTCCCGATTACAGTAACAGAAAAGTCGTGTGCGCCTTTTGCATGCGTCGTTTCTGGTCAGCTGAGGACTTGCGCCGTCACATGCGCACGCACACGGGTGAGCGACCGTTTTCCTGTGACATTTGCTGTCGTCGATTCACCCTCAAACACAGCATGTTACGTCACCGAAAGAAGCACGAATCAGTAGATTCGACAATGTATGTCGGAACGAGTGGTGATGAGGATAATGGAACGGTTGGGCCTATGACACAACCACCGACGATAACGCCCCGTTCACAACATCAATCGGCTAATACTACGGGTAGTAGTTGTGTGCCCCAAGTCGGAAGTGTAGCCACCGGCGACGCTGCTCCTAGCAATCTTATGCGCTTCAACCCGTACGAGAAGCTTACTACCCTTACGGGCAAACTGACGACGGGAGTGACATCGAGTCTCGCGGTCGAAACCAATGATAACACAGACAACGATCTGATCTCTAATCTTTTAGGCATCAGGGATAAGAGCATCATCGATCGCGTACTTCAAGCATCGGCCGACGACGCGGCTAAGCTCCTCGGTGTCAAGGGCAATCATGAATAA
Protein Sequence: MKYSFRLTAETGPDQRDDCNENQTDVASSPLVDQPEGTHPCPACPLVLASSRDLTNHLRGHNSPRSTSDCSGEEVDYACGVCHKVLSSASSLDRHVLVHSGERPFKCKYCDMAFTTNGNMNRHLRTAHRTVSPSHSCTDSEGSCDSERPLKRRLIQEEYNNNEVAKRNSPELIEDDKRSRSPEHIGKRKCPDFVDEVDSHRRHKILLGNARTEIRSVYTEPVQNTYNCTVCGRQDFATSALLETHLERSHPEIPAKCESCNLSFKNHRALNLHRFMIHFSEHGAAAVTRNLRNSVVGFNDLTFVDFSSDKFPAIARAVCEQSLHRPASGETPRYQCSKCLRAFPCRSALDAHETDCGLIPIDVADHRMHDEQSIRDDFFAGLDLQNKAALAEAKEGKDLADIQSIISVTSGPILQNFSRSDTSTPDNCKIKQSLGSSGSSGTPSSEYHEEEAQDAFAAEFRKMKLKGEFPCRLCTAVFPNLRALKGHNRAHMGVGAGMPYPCNMCPYSSTDKATLVRHLRSHNGDRPYECSLCNYAFTTKANCERHVRNRHGKLSREEIKSVLIYHPSEDSTNDSSLERSSPRGLVRDDVRKTLIYSNERDELTSQQLLYPTEIRIKDETKLRQPGLAGLTGLHGVDVGHYDKNDVFPRPSTIQPLELTYRNDELDKAQQINMKHVDDDIDSRSSDGSVSLVSETKADAHQRIQASPMDLKILNMNEASTIEGSGVEDAPLDLSMDVLDLSKKATAAAAVVAAIKDNEGGDINGNAEDLSNNHKDLYNTTNQLLLTQALLKAGRVGSQPSSLETFYANAHMIYRNFGTFPGVGAGILQPYLFNPHLFSQDFGMKDRLQKELVRGLQTSGGTLLEPPTPGFPATFSPARNPPPNHNVNEQTEYANIISSKVINKSISPREKIETSPSANSVKMVIKNGVLMPKQKQRRYRTERPFTCEHCSARFTLRSNMERHIKQQHPQHWSQRPRGGHSTRGRPPTNPPTLLQNLGQPSSHQQISQSYSNLLPKLGQSLTPDYGKHAISDQVKYAILAQQLKGNKHEENDTDEELIIDEESANLEKEAREGNAKEPSQRTLSLLRGKLEANIECKGTDNSEIKELKHSNEQKIKIKEEIETNDDSKSYENNIFKKSDEYIGSDNEETANEIRQTSIKSDLKISVKEEHNENEDLASVSEILDNASQHYQQFQSQYMSDEEGLVASTSDCNQSGSDEKSDSINSGNSGNSSTSKKKKKMKKKKKKKKSAYSMAPNRVICPYCERPFPWTSSLRRHILTHTGQKPYQCMHCSLLFTTKSNCDRHLLRKHKANANKIRRARSTSSPEAQEVVTNNNSQFSMRNVPERPYKCNQCPSSTFSTLGNLKKHRSTKHARNTKSRPESPSSEPHNNCPQDCPKQNDQSGYESQSSGVSENLENNNSTAINTSKTLVNSNNVSLTTNESSRSRRTSPRSSPGPTTEAPFKCHLCDSGFAERQDCLEHIKDNHERSYEMLVAKGALDMDIDGHEEQMTPIPPPPQHPSDGEERRGRFPDYSNRKVVCAFCMRRFWSAEDLRRHMRTHTGERPFSCDICCRRFTLKHSMLRHRKKHESVDSTMYVGTSGDEDNGTVGPMTQPPTITPRSQHQSANTTGSSCVPQVGSVATGDAAPSNLMRFNPYEKLTTLTGKLTTGVTSSLAVETNDNTDNDLISNLLGIRDKSIIDRVLQASADDAAKLLGVKGNHE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01524201;
90% Identity: -
80% Identity: -