Pcor040946.1
Basic Information
- Insect
- Platyscapa corneri
- Gene Symbol
- -
- Assembly
- GCA_018907185.1
- Location
- JACCHW010000139.1:211836-217456[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 8.1 2.7e+03 0.9 6.0 2 23 254 276 253 276 0.96 2 20 0.28 93 5.5 5.8 1 23 349 371 349 371 0.97 3 20 0.00033 0.11 14.7 0.1 1 23 420 442 420 442 0.98 4 20 0.017 5.6 9.3 0.4 1 20 497 516 497 518 0.93 5 20 0.0038 1.3 11.4 1.2 2 23 559 580 558 580 0.96 6 20 0.00012 0.04 16.1 0.2 1 23 623 645 623 645 0.97 7 20 0.00032 0.11 14.7 0.1 1 23 651 673 651 673 0.97 8 20 2.6e-05 0.0086 18.2 5.5 1 23 713 736 713 736 0.95 9 20 0.00041 0.14 14.4 0.3 2 23 744 766 743 766 0.95 10 20 0.02 6.6 9.1 0.1 2 15 793 806 792 809 0.89 11 20 8.1e-05 0.027 16.6 1.3 1 23 826 848 826 848 0.93 12 20 0.094 32 7.0 0.0 2 20 906 924 905 924 0.95 13 20 0.00021 0.069 15.3 0.3 2 23 943 964 942 964 0.97 14 20 0.0091 3 10.2 5.8 1 23 992 1014 992 1014 0.97 15 20 0.0085 2.9 10.3 3.1 3 21 1035 1053 1034 1057 0.89 16 20 0.14 49 6.4 0.2 2 23 1114 1136 1113 1136 0.93 17 20 0.014 4.9 9.5 3.6 3 23 1166 1187 1164 1187 0.90 18 20 0.00081 0.27 13.5 0.7 1 23 1194 1218 1194 1218 0.95 19 20 0.063 21 7.5 2.0 1 23 1223 1246 1223 1246 0.94 20 20 0.006 2 10.7 0.4 3 23 1278 1299 1276 1299 0.95
Sequence Information
- Coding Sequence
- ATGGACGACGTTGTGGAGATTAGTGGATTAGAAAATGCTTGCAGGTTGTGTCTTACCATCGAGCAAACTAGGTCGTCGATTTTTGGCGTGCCGCACGTATCTGTTCCCTTCGTCGACAAGATTCGCGCGTGCTTGTCAATACAGATCACCTCTCATGATAAATTATCAACCCTAGTGTGTACATCATGTATAAAAAATATAAACCAATGGCATTCTTATAAAGATATATGTCTACGGTCTCAAGAGAAACTTCAACAATGGCTAGCAAGACAGAACACATTTATTCAACCAGTAGTAACTATAAAAGAAGAGCCAGTAGATGTAGAGTATTCAGATGACAATCCTCAAATTGTGACCAATGAATCCAATATGTCTAATCATGTTGCTTCAAATACTGAAAGTATGGATATTGATGGTGAAAGTAATGTTACATTTATTAAAAATAATGTAGTTCAACTTCCAGTGGAAATATCTCCAAAAATGAATGAAAAAATTGATAAAGAACATTCTCCAATCATTCAAATAAAAACTGAACCTGTAGATACAGAAGATGAAGATGATTGTAATATAGATGTTGAATCTGTCAATAGTGGAGAACTTTTAATTAATCCAATGGCAGTGGTGGCCAGTAATGGCAACAATGATAGAATAATGGAGGCTGATTCAACTCAAAAATTTGGTCCGAGAAGGTTTGGAACGAAAAAAAGAATGCGTCGTGGACCTCACACACATTATAGAGGTATCAGGTTATTCAAGAAAAAGTGTGTACACTGTAAAATCTATTTGCACTCTAAATACTCATACTCTCAACATATGTCCAGATACCATGGAATTGTTAATAACTTACCTAATGATTTTGTAAAGCCACCAAGTCAGCCACTAATGAAAAAACAAAAATCTAAAATTTCTTTTCATGAAGATAATACAGAATCTGTTACAGATACACAAAATGAACTTAATAATGAAGATTTAGAATTTGAGAAGATGATAAAAACTGATCCTCTAATACCAGTTCAAAAGACGATTATTAGCCAATTAAAGACCTTTTCTTGTTATTCATGCAAACAAACCTTTTTTGATCGAAGACACACTTTGAATCATATCAGACAACACATGCCTGATCTACGGCCATTCACTTGCATTGCTTGCCTTACTGAATTTTCAGATAGGTCCATGTATAAGCTTCCTTGTGGAGCTTCATTTGAGTGTGCCATGAAAATAGCTCTTGTCGTTCCAAAAGTGGGTAATGAGAAATATTTTACTTGTAACATGTGTCTTCGTCCTTTTGATAACCGAAAAGAGCTTCTTGCACACTTAGCTGTACATGCAGACAAACAGTACCAACAGTTATCCCAACCCTTAAGATCTCCACCCAAATTGAAACCAATAAATCCACCTGTGGCAACTGCTAAGGTTGATTCTTCGCCTACTCCAAAACCTATTATTACTGTATCTGGGCCTTATGTGAATGGTGATCCAGCTCATAATCATATGTGTGATTTGTGTGGTATGATTTACAGATATAAACCTAATATGTTCAAACATCGCGAGCTCTGTTCTACTTTACCCGAGAATATTAGAACCTCCTATAGATGTATCCACTGCAACATGACATATCTTGTATACAAAAAGTTCTATACGCACGTATTAAACGATCATAAAAAGCGAGAAATTACTTGCTTTACATGTAATGAGAAATTTACCACACCGGATGATTATCTTGGTCATCACGAAACCCATCGTATTCACGCAAATAAGGAAAATACGAATGAAATTGCGAACGAGCAGCAGCCGCATAACGAGTACTCGATGTCAGGAGATCCTTTGAATTCGTCGACACACCCTATGGATGTGAGCGAGAAGCCTTTTAATTGTGCTCTTTGTGGCGAAGATTTCACTACAAAAGTTGAGCTTACCGAGCACCGTAACCTTCATCTCAAAGTGAAAATTTACTCCTGTGTCATTTGTCGAAGCATGTTCAGTAGCTCAGGAGCTCTTGAAGTGCACATGAAGGACCATGGAATAGAAGATCCAGGCGAGCAAAATGCTAACAGTTCGTGTGTTGAATATGGACGTGAAAGTCGCTCTCAGACTGCAATTAACAATTCATCCGCATCAGATCCTGGCGGGTGTTTCCACCATTGCCATGAATGCGGTAAAAATTTCTCCAATGTTGCGAATTTAAAGAGACACGAACGGAATTTACATGCGAAACAAAGGCGCCGTTGGAGTTGTGACGATTGTAAAAGACGCTTCAAGTCACTTGAAGCCTATAACGAACACGTGAGATTAGAACACAAATCAACACAACAGCACGGTGAAAAAGTATCGGCATCAACACCTCAATTGTCTTCAAGCACCGGTAAACCTTTGATGCAGTGTCCAAAGTGTCCCAAGACTTTTGCTTATCAGGCGAACGCAGCACGTGCCGTGGCTCCTCCTCCTCGGCCCGCATCTACTGTCACCCCTTGGGGCCATTCCTGTGATATCTGCGGAAAAACATTCCGAGAGGAACAATCCCTCAAGACTCATCGTGGTTGGCATCTTCGTTCCACGTATCGCCTCAAAGTTGACAAGAACGCGAGTTTGGATGAGACGACGCTCAGTGGTCCAGGCTACACTATGACAATGACGAGTTCCATTAAACCTGCCAAGGCCCGAAAATCCTTTCCCAATAACCCCCCTCAAAGACAGCTCAGTAACATCACAAGTTTGCAATGCCAAGTATGCGATGATCGCTTCCCTGACGTCGCTGAATTGAGGAAACACTTATGGGACATCCATTGCGCTCGCAACAAGCCTGAGAAGTCTTTCACGACTGGACTGCAGTGCGAGCTTTGCACAAACAAGTTCTCAGACGAGGAGTCTTTAGAGAATCATATGAAGTGGCACTCACAGAATCCGATTTTAAGTAATAACAGTACCGTCAACAATGTCAATACTGTCAGCCAAGATGCGCATTCTACTAAAACCTTCTGCTGCGACACCTGTGGCAAATATTACAGCAACCGCAAATTGTACCTGCGCCACAAGAAGCTTCACAAGGTTTTACCTGCCACGACGATGATGAACCTTCAATCGTTGCAGACGAAGCGACCGTTTTGCACGTCTTGCCAGAAAAGCTTTTCCACGGATGCATCCCTTAAACGGCACAAAGCCTCGCCGTGCCATCACAGTGCTGTACGTACGCAGAATCAACATGGGCCCAAAAAGATAACCACGACAGCGATGGTTCATCATCCACCCTCGGAGCCGGTGAGGCTGCAGGCAGTCAAAAGAGAACCGGGTGTCGAGTACGGGAGCCAGACGGGTGTATACGGTACGAGAAAGAAGCCGGTGACTTGCCTTATATGCAAAACTATTTTTCCAAATATGAGTGTACTTTATCAGCACAAGCAACTTGTGCACAAACTACCTACTAGTGGAAGGGACAGAGCCAATAGTCATCAGCAAGCCGAATGTGTGCCTTTGGTGAGTGCCGAGGGTCTCGTCTGCTGCAACTTATGTGGTAAGCAGTTCCCAGGTGTCTCCAACCTCAAACAGCATTTTTCCCATAAACATAAGGCCAAGAGCGCCACCTTCCCCTGCAGTTCACCGGGATGTAAGCTTGTATTCAGTAGTGCCCATTCGCTCAAGAGCCACGAGACGACGCACTCAAGTATGATTTACAACTGTCATCTCTGCGACGGCCACGTGTTCTCCAGAGCAGCCATGACCAAGCACATGATAACTATGCATAAAGCGATTTATCAATCGGGAGCGAGCAAAAGCAGTCTTTGGTCTGAAACGGACTTAACAACTTATAATGTGAAAAATTGTCAAAGCACGGCCTGTCCCAAGTGCAAAATTAAGTATCCCAATTTGAGAGCTTTAAAGATTCACTATCTTAAATTCCATGAGAAAACATAA
- Protein Sequence
- MDDVVEISGLENACRLCLTIEQTRSSIFGVPHVSVPFVDKIRACLSIQITSHDKLSTLVCTSCIKNINQWHSYKDICLRSQEKLQQWLARQNTFIQPVVTIKEEPVDVEYSDDNPQIVTNESNMSNHVASNTESMDIDGESNVTFIKNNVVQLPVEISPKMNEKIDKEHSPIIQIKTEPVDTEDEDDCNIDVESVNSGELLINPMAVVASNGNNDRIMEADSTQKFGPRRFGTKKRMRRGPHTHYRGIRLFKKKCVHCKIYLHSKYSYSQHMSRYHGIVNNLPNDFVKPPSQPLMKKQKSKISFHEDNTESVTDTQNELNNEDLEFEKMIKTDPLIPVQKTIISQLKTFSCYSCKQTFFDRRHTLNHIRQHMPDLRPFTCIACLTEFSDRSMYKLPCGASFECAMKIALVVPKVGNEKYFTCNMCLRPFDNRKELLAHLAVHADKQYQQLSQPLRSPPKLKPINPPVATAKVDSSPTPKPIITVSGPYVNGDPAHNHMCDLCGMIYRYKPNMFKHRELCSTLPENIRTSYRCIHCNMTYLVYKKFYTHVLNDHKKREITCFTCNEKFTTPDDYLGHHETHRIHANKENTNEIANEQQPHNEYSMSGDPLNSSTHPMDVSEKPFNCALCGEDFTTKVELTEHRNLHLKVKIYSCVICRSMFSSSGALEVHMKDHGIEDPGEQNANSSCVEYGRESRSQTAINNSSASDPGGCFHHCHECGKNFSNVANLKRHERNLHAKQRRRWSCDDCKRRFKSLEAYNEHVRLEHKSTQQHGEKVSASTPQLSSSTGKPLMQCPKCPKTFAYQANAARAVAPPPRPASTVTPWGHSCDICGKTFREEQSLKTHRGWHLRSTYRLKVDKNASLDETTLSGPGYTMTMTSSIKPAKARKSFPNNPPQRQLSNITSLQCQVCDDRFPDVAELRKHLWDIHCARNKPEKSFTTGLQCELCTNKFSDEESLENHMKWHSQNPILSNNSTVNNVNTVSQDAHSTKTFCCDTCGKYYSNRKLYLRHKKLHKVLPATTMMNLQSLQTKRPFCTSCQKSFSTDASLKRHKASPCHHSAVRTQNQHGPKKITTTAMVHHPPSEPVRLQAVKREPGVEYGSQTGVYGTRKKPVTCLICKTIFPNMSVLYQHKQLVHKLPTSGRDRANSHQQAECVPLVSAEGLVCCNLCGKQFPGVSNLKQHFSHKHKAKSATFPCSSPGCKLVFSSAHSLKSHETTHSSMIYNCHLCDGHVFSRAAMTKHMITMHKAIYQSGASKSSLWSETDLTTYNVKNCQSTACPKCKIKYPNLRALKIHYLKFHEKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00305786;
- 90% Identity
- -
- 80% Identity
- -