Basic Information

Insect: Platyscapa corneri
Gene Symbol: -
Assembly: GCA_018907185.1
Location: JACCHW010000001.1:7970976-7979022[-]

Transcription Factor Domain

TF Family: MBD
Domain: MBD domain
PFAM: PF01429
TF Group: Unclassified Structure
Description: The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 2.8 4.3e+04 -4.1 0.1 44 58 174 188 171 197 0.72

2 3 3.9e-16 6.2e-12 46.7 0.1 6 73 255 317 251 319 0.90

3 3 2.1 3.3e+04 -3.7 0.0 42 63 358 378 357 381 0.76

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	2.8	4.3e+04	-4.1	0.1	44	58	174	188	171	197	0.72
2	3	3.9e-16	6.2e-12	46.7	0.1	6	73	255	317	251	319	0.90
3	3	2.1	3.3e+04	-3.7	0.0	42	63	358	378	357	381	0.76

Sequence Information

Coding Sequence: ATGCAAGAATATGACCATACTTTATTTGATAAAAACTTGATGTTTACAAATAAAGAAGCACCGAGTATTTTAAAAATTGAAAAAAAAGCAATTAATTCCATAAACATAGATAATAGTATTAAATATTTAGAAGGGGAGAAAATTTTGATTGAAGATAAAGTTGAAGTATCTTCAGAAAAAGATGCACTAGAACCTTTAAATAAGAAATTAAAAAGCTCGTACGAAAATCAAATTATTAATGAAAAAATAGTTTTATCAGTTGCAGTAAAAGAAACTACACACGATGAAAAAAATTCTCAAAATTTAGAAGCAGTGCAAATTCCAGATTCTGAAATCACATCTGAAAATAGACCAACAACTTCTAATGGATTCTTCACGAAGGAGCAACTGCCTTTGGAAAGTAACAATAAATTACTTATGCAGGACAACAAATACCAAATGAAATTAAGGGATAAAAAGAAAATTTCTACTAAACAATCAATAACATCGATTATGTCGCCAAGCATGATTAAAACGAATTCCAAAAGGAAATCAATGAAAACATACCTTATTAAACATAATAATAAGAAAAAAGAAATATCTCTAAAAGCTATGAAAATTATTGTTAATCCTCTAAGAAAAAGAGGAAGGCCTTCTAAAAAAGAACTAGAATTAAGGAAACATTTGATTAAGCGACAAAGCAAAAAAGAGAATCTTTCAAAGAATGAAAAACATTCTTCTAGCAAAAAAGTTGCAGAAAGTGAAATGGACTACACCAATCCGAAATATCGCGAACCATTCAAATATGGTTGGAAGCGTGAAGTGGTGTACCGATCACTTTCGAAACAACCCAAGGCAGACGTGTATTACTATACACCACAAGGAGAAAAACTTAGAAGTTTAATATCAATTAGTAAAGCTCTTGACAATACTGGCTTGACTTTAGACAATTTTACATTCCACAGAGGGTCAGTTGGCATGGGCGATACAGACAAGGAAATTATTCGACATTCAAAAAAGAAACGTGGTCGACCTAATAATTCAAAAGATTTGTCAGAATTGTCAATCAATAAGTTAATAAAACTTAACAAAACAGTGCAAGAATTTAGTGAGATTCATGAAATTATATCTACACAAAATGAGACTAATACAACACCTTTGTCCACTATGTCACAAAATAATTTTAATAGTACCACCAGTATTATGGATGATTCTACACAAAAAGTTGAATCACGGCCAAATATTTTGCATGTGCAAAGTTCGTCGACTTTCCCAGCCACTTTGACAACTCCAATAGAAACTCCTGAAATCTGCTCTTCTACAAAAATTAGAAATGAAAACGTTGAGTCAAACTTAAATAAAAATTGTTTGTTAGAAAATAATATGGATAAATTTAATAAAGACAATATCAATCAAATGGGAAAGGATGTAATAAAGGAAACTTTAAATGAAATAGAATCAGTTCCATACGATGTAGAAAAAGAGAGTGATATATTTCACGAAGATACTTTTAACGCCGCAACAAACATCGACCATTTTATTAATTTGGAAAATATGACACATACAAGTGAAAATAAAATTCAAGAAATGCAGAATATTATTGAAATAGATAATTTTTCTTCAAAATGCAATTTATTAAAGAATAATAATATTAATAGTAGTTTAGACTTAAATATTGGCACGAAAAATTTATTTGAAAAAATTGACTTCAATAATAAAATTGCACAAGATAAATTTACGGAAATGAATTCAGAAAATTCTATGAAGAATATAAATAAATTTCATAAATTTCTTTTGTTACCTAAAAGTACAATTGATAATACAAAAATTAATAAGCAAATTATATTTGAAGAAAAAGCGAATTCTTTTATAAATTCTAGATCGCCAAAATCTATACCGAATACAATTGTTAGTATAAGTACAAATGATACAAGCATTGATTGTAACTCTTCCAAAACTAATTTTTCACCTATACACCAAAATAATTGTTCAACTAAAAGGATCAAGTTTAATTTACAACAAACATCTGTACATCCTCATTCTATGGAATCATTTTTTGCTGCATATGCTGCACTTAAAACTAAACACTTATTAGTTGTAAATGATGATCATAACAATTGGGAAAGATTCATTAATGCAATTTTAAACATAAAAAGTCTTCATGTGCTTGAATTGCGTTCTTGCCCAGCAGTTGCCCTCGAAAAGATCGTCGCAAAGTGTCCACAACTAAAAATAATCAGTGCATTATCGATTAAGTGTCAGGCTATTAATCTGGAACATTTAAGAAACTTAGAAAAACTCGAAAAATTTTATCTAAAAACCATGACCAATATAACATTGGAAAATGATCTCACATGCATATCAAAGTTTGCAGAACTAACTCATTTGAGCTTAATGTCTATCAAAGATTTAGGAACGAAAAATATTGAAGTTATACGATTTTTCTCAAACCTAAAGGTTTTAGAATTAAGTGAATGTTCTGGATTCAATACATTTGGTTCAAATGTACTCTCTGAACTAAAAAATTTAAAGCGATTAAGACTGGAAAAAATACGAGATTCACGTTGTTCTACGGATATTTTAATAAATGTTTCCAAATTGGAAAAATTAACTGATTTAGAGTTAATAAATATTGACGTAACAGCCGGATTCGATGAATATTTGCCCAAGTGTCAAAATCTTACAAGACTTGTACTTGTTCCCATTTATGACCGTCAATCTGCATTATCTAATAATATTATTTTGAAAAGCACGACTGAATTAAAGAATAATTTAAAACACTTTGTATGGGGTATCACTGAAGATCTTTTTCAACTTTCTAAGGTGTTTTTTAATCAATCTGAAGATGATTGGATACCATTTTACAGACCAATTCCTCATTTTCCACTATTAGAAAAAAATTTGAATACAGAACAACAAAATTTATCTAAAAAACAATTTCAAATGGTTATAAATGTTTTAGTAAATATTTTGAGTGACCAAGAAAAAATCCTGTTAAATACATCCAAATTGGATATGTTGTCAGTATCTAATTTGCAAAAGCTTTATTCTATTGTTCTCCCAGAAACAAAATTGGATATTTTAAAAATTACAACACAGCTATAA
Protein Sequence: MQEYDHTLFDKNLMFTNKEAPSILKIEKKAINSINIDNSIKYLEGEKILIEDKVEVSSEKDALEPLNKKLKSSYENQIINEKIVLSVAVKETTHDEKNSQNLEAVQIPDSEITSENRPTTSNGFFTKEQLPLESNNKLLMQDNKYQMKLRDKKKISTKQSITSIMSPSMIKTNSKRKSMKTYLIKHNNKKKEISLKAMKIIVNPLRKRGRPSKKELELRKHLIKRQSKKENLSKNEKHSSSKKVAESEMDYTNPKYREPFKYGWKREVVYRSLSKQPKADVYYYTPQGEKLRSLISISKALDNTGLTLDNFTFHRGSVGMGDTDKEIIRHSKKKRGRPNNSKDLSELSINKLIKLNKTVQEFSEIHEIISTQNETNTTPLSTMSQNNFNSTTSIMDDSTQKVESRPNILHVQSSSTFPATLTTPIETPEICSSTKIRNENVESNLNKNCLLENNMDKFNKDNINQMGKDVIKETLNEIESVPYDVEKESDIFHEDTFNAATNIDHFINLENMTHTSENKIQEMQNIIEIDNFSSKCNLLKNNNINSSLDLNIGTKNLFEKIDFNNKIAQDKFTEMNSENSMKNINKFHKFLLLPKSTIDNTKINKQIIFEEKANSFINSRSPKSIPNTIVSISTNDTSIDCNSSKTNFSPIHQNNCSTKRIKFNLQQTSVHPHSMESFFAAYAALKTKHLLVVNDDHNNWERFINAILNIKSLHVLELRSCPAVALEKIVAKCPQLKIISALSIKCQAINLEHLRNLEKLEKFYLKTMTNITLENDLTCISKFAELTHLSLMSIKDLGTKNIEVIRFFSNLKVLELSECSGFNTFGSNVLSELKNLKRLRLEKIRDSRCSTDILINVSKLEKLTDLELINIDVTAGFDEYLPKCQNLTRLVLVPIYDRQSALSNNIILKSTTELKNNLKHFVWGITEDLFQLSKVFFNQSEDDWIPFYRPIPHFPLLEKNLNTEQQNLSKKQFQMVINVLVNILSDQEKILLNTSKLDMLSVSNLQKLYSIVLPETKLDILKITTQL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -