Pcyl011875.1
Basic Information
- Insect
- Platypus cylindrus
- Gene Symbol
- -
- Assembly
- GCA_949748235.1
- Location
- OX456492.1:5080445-5082706[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 8.9 1.3e+04 -3.6 0.4 24 30 140 146 135 149 0.75 2 6 0.0018 2.6 8.2 0.1 19 47 191 219 187 224 0.87 3 6 0.00021 0.3 11.2 0.0 21 44 249 272 246 276 0.93 4 6 0.72 1e+03 -0.1 0.1 22 44 306 328 299 336 0.81 5 6 0.00014 0.2 11.8 0.2 25 47 337 359 330 362 0.86 6 6 2.1 3e+03 -1.6 0.0 27 36 529 538 525 540 0.88
Sequence Information
- Coding Sequence
- ATGACAGAAATTGTATGTATACAGTGCCAAAGATCATCAGATATTCCTTCGAATCGTTTAGTTCAAGACTCGTGTGGTCACAAAAAATGTAGGTCCTGCCTTTTAGAAGATGTCGAAATATGTAAACAATGTCTGACGATTTTGCCATGCGAAGAAAACCAcaattcaaatgatattaaaaGTTCAATAGACTTGAATGACTATGATGTGAATGTTACTGCAATATTTGATACATGTACAAGCAGTGATATTTCAAATGATTCAAAGGAAGCAAAGGGTGAATCTGAAGACGATGTAAAAATTCTTAAAGAAGAAAAGGAGGCTCTCATAGATATTAATATGGATACTGAAATCGAAACAGAGTTTGACATAGAATTACCTGATTATATAACGATGAATATGGCGCAAACCTCAGTTACTTATACTTGCACAATTTGCAGCAAGACATTCCTATCGAAAAGTGATACAAAACTGCATGAATCTTGTGCAGCAGCTTTACCGTTTAAGTGCGAGACATGTAAACAAATGTTTGAAaccaaaattcaattaaaccTTCATCATTACAAACATTCAAGAGAACCAAAACCAAATTTTTGTCCGACTTGTCGAAAAGTGTTTACTGACAAAAGCAAATTATCGAGGCATTTAATTTTGCATTCTTCggataaaaaatatatctgcTCACAGTGTGCCAAAGCATTTAAAAGTCGcgattatttgaaaattcatttattaaccCATGACGCAGAAAAGCCATTTAGCTGCCATGTTTGCTCTGCCAAATTTAATCATTCTTCAAATTTAAAGAAACATTTAGTTTCCCATACAGACGAAAGAGCCTATATGTGTGACAAATGTGGAAAaacattcaaaataaattggGCGTTAACAGTGCATAAAAAGTCCCATTCAGCTGTAAGACCACACAAATGTAATCTATGTACAAAAGCGTTCGTTAACTTCAAAGAACTGCAAAGGCATACTTTAATACATACAAAATCTAAAAGCTACACCTGTGGGATATGTAAAACAAGCTTCCGACGTAAGGACAACCTGCGTCGTCATGCGAAAAACACACATCCGGGCATGGTAGCAGAAATAATACAGAATACTACCGATTTACCGGAATTACCCGAAACCCATATTGATAATCCTAACGCTATTAATGTCATTACTTCCGTGTCTCCCTCCTCTGTTACAACGGTTAGCACCGTAATGGCAGAATCATCACAATCCACTTTTTTATCTACGGATGCTTCCAGGACTGCAAGTTCAATTATTAATGCACCAGTAAAACTTGCATTTAAACCTCCAGCTTTCAAGAACAGTTACAATATCGCTTCaGACGAAAACGTTATATTACCAGACAATGTTTCGCCGTCTTATAGTTTGGCAGATGGAACAAATTCAACATTGGGCTCTTCGACTACTTCCCTTACCACATCATCTTCGGCTATTTGTGCACAGAGTCGTCTAAAAATTACTCCTCTCAGAAATCCGTGGAAAAACAATTCTCATTCCTCGAATTTCATAATTAAACCGCCTCCACCACCACCGAGTCGTCTTTTAGGGAGAAATGAAATATCACCTCTTACCTATGCTGGAATACGCCAATTAATAAGTACAGGTGAAAAGGGTCCCTTGCCTGCATTTAAAGAACAGCATTATGATTTAGAAGCCAGTAGTATTCATTACGAGACTTCCTTTCTGAATAGAAAACATGCtatgattaaaaatattaagttTAAAGTACCTGAACAATATACAAAACTATTCACACAAAAACTTCTAAGTAAAAACAGTAGTATAATTACCAATAATAATTGCAATAGTAATACTAACGGTATACATTATGATAACTTCAATTGTAATAAcattaacattaataattcGAGTCTAGAAGACCCACTGGCAAATGCCAGTTTAATAATAAGTGAAAATGAAGTTTCGTTGATATAA
- Protein Sequence
- MTEIVCIQCQRSSDIPSNRLVQDSCGHKKCRSCLLEDVEICKQCLTILPCEENHNSNDIKSSIDLNDYDVNVTAIFDTCTSSDISNDSKEAKGESEDDVKILKEEKEALIDINMDTEIETEFDIELPDYITMNMAQTSVTYTCTICSKTFLSKSDTKLHESCAAALPFKCETCKQMFETKIQLNLHHYKHSREPKPNFCPTCRKVFTDKSKLSRHLILHSSDKKYICSQCAKAFKSRDYLKIHLLTHDAEKPFSCHVCSAKFNHSSNLKKHLVSHTDERAYMCDKCGKTFKINWALTVHKKSHSAVRPHKCNLCTKAFVNFKELQRHTLIHTKSKSYTCGICKTSFRRKDNLRRHAKNTHPGMVAEIIQNTTDLPELPETHIDNPNAINVITSVSPSSVTTVSTVMAESSQSTFLSTDASRTASSIINAPVKLAFKPPAFKNSYNIASDENVILPDNVSPSYSLADGTNSTLGSSTTSLTTSSSAICAQSRLKITPLRNPWKNNSHSSNFIIKPPPPPPSRLLGRNEISPLTYAGIRQLISTGEKGPLPAFKEQHYDLEASSIHYETSFLNRKHAMIKNIKFKVPEQYTKLFTQKLLSKNSSIITNNNCNSNTNGIHYDNFNCNNININNSSLEDPLANASLIISENEVSLI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01216213;
- 90% Identity
- iTF_01216213;
- 80% Identity
- iTF_01216213;