Pcyl000242.1
Basic Information
- Insect
- Platypus cylindrus
- Gene Symbol
- Mrrf
- Assembly
- GCA_949748235.1
- Location
- OX456488.1:291736-295908[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 4.9 7.1e+03 -2.8 0.1 30 48 91 104 85 109 0.55 2 9 0.0038 5.5 7.1 0.0 21 45 110 134 103 143 0.88 3 9 3.2 4.6e+03 -2.2 0.0 26 45 143 162 140 171 0.77 4 9 0.00099 1.4 9.0 0.2 17 47 189 220 183 225 0.84 5 9 0.0029 4.2 7.5 0.0 22 47 223 248 220 253 0.88 6 9 0.55 7.8e+02 0.2 0.1 23 46 252 275 249 278 0.85 7 9 0.064 91 3.2 0.1 22 45 279 302 274 310 0.81 8 9 0.49 6.9e+02 0.4 0.2 23 44 308 329 302 333 0.89 9 9 0.0023 3.3 7.8 0.1 21 47 334 360 327 363 0.90
Sequence Information
- Coding Sequence
- ATGGTTTGTGGTATTAAAGAGGAATACGATGATATAGAAAGCTTAGaagaatttaaaatagaaGTACAAGGACCACAATATCCTGATATTTCCTGTTACTCTGATAATGAAGAACGAGTTTTAGAAGAACTAAAAGCTGTTCCGCCGATTAAAGTGGAAACAACTATAAATGATATTGGTAACACAACATTAGAACTAACTGAAAATGAAGAACTCAGTGGAAATTCGGCAGAGGTgcaaacaattcgaaaaaaatatacttGCGAATTTTGTTCAAGAGATTTTAATCGACACAACAATTATATTAGACATATGGGAAGTCATAGTGGCGAAAGACCGTACGTTTGTGAAATTTGTTCAAAAACATTCAGTGAAAATGGCAACTTAAAGAAACACTTACTAATTCATGTTGgttTGAAATCGTATAGTTGCAAAATTTGTTTGAAAAAATTTACATTGCAACATTATTTAACGAGACATATGAAACAACATAGTGATGAAAAACCATACAAATGTGAAGAATGCTTTAAAAGCTTTCGTTTCTTTGCCAGTAAACAGTCGCACGCTCGAAGCCATACCGGTGAAAAACCGTACAGTTGTCAGGAATGTTCGAAAACATTCAGTCAATCGACATATTTACGAGTACATATGGAAATTCATAGTgGTGAAAAATCTTTCAGTTGTGTCGTGTGTTCGAAAGGATTTCGAAAGAAAAGTAATATGCAAAGGCATCTGAAACTCCATATGGaaGAGAAAGAATATAGTTGTAATGTTTgctcaaaatcatataaaagtACCGCCTATTTGAAAAGGCATATGAAAATTCATTCAAGAGATCAACCGTATACGTGTCACATGTGCAATAAGACATTTGGCTATTTTGGTAATTTACAAGCACATATAAGAAACCATAATGgtTTAAAACCATACACTTGTCAGCAGTGTTCGAAAACTTTCAGTCGAGTCGAACATTTACGAAAACACATAAGAACTCATACTGGTGAAAAACCATTTCGTTGTAACATTTGCACGAAAGGTTTTAGTACCAAAAGCAATTTACAACGACATGTTAATCTTCATAAAAaGGGAGAAACTGAGAATTGTACAAGTTGTATATCTTCAGGATGTGCTGGTCGTGGTAATGACGAGTTAGGCGCACATTCAACCAATGAAaagttattaataaaacagtgGAATGTAATCAATTTGGAAAGAAATTATGCAAAAGGAAGAGATAAAAAGAAGGATAAAGgCAAAACTAAAGTTGTTATTAACGAAAACGAAATAGGAGAATTAACTAATATAGAAAATCTTAAGAAAAACATGACAATAGCAATTAATCAgttagaaaatgattttattaaacatttatctTTGAGATCAACAACTGGTGCCATAGAATCTATTGTAGTCGATCTGGATGGTAAAGAACACACCTTACAAGAACTGGCAcaaattataagaaaaaatcCCAAGACtgttgtattaaattttataaattttccaCAAGCAATTCCGGCCGCTCTAAAAGCAATAGAAAAATCTGGCATGAATTTAAGCCCTCAACAAGATGGTACTACATTGTTTATTCCAGTACCCAAAGTGACAAAAGAGCATAGAGAAAGTCTATCAAAAAATGCGAAACAATTGTTCATAAAATGTCGAACAACAGTAAAAGACGTACAACAAAAacatataaaacaaattaaaaggAATACGAAAATATCGGAAGATTCTGCTAGACATGTGGAACAACAAATTATTGCTTTAGCTGACCAATACGTTGCTGAAGCTGAAGCCCTATTTCAGAAAAAACACAACGAATTATTGGGAGAAAAATAA
- Protein Sequence
- MVCGIKEEYDDIESLEEFKIEVQGPQYPDISCYSDNEERVLEELKAVPPIKVETTINDIGNTTLELTENEELSGNSAEVQTIRKKYTCEFCSRDFNRHNNYIRHMGSHSGERPYVCEICSKTFSENGNLKKHLLIHVGLKSYSCKICLKKFTLQHYLTRHMKQHSDEKPYKCEECFKSFRFFASKQSHARSHTGEKPYSCQECSKTFSQSTYLRVHMEIHSGEKSFSCVVCSKGFRKKSNMQRHLKLHMEEKEYSCNVCSKSYKSTAYLKRHMKIHSRDQPYTCHMCNKTFGYFGNLQAHIRNHNGLKPYTCQQCSKTFSRVEHLRKHIRTHTGEKPFRCNICTKGFSTKSNLQRHVNLHKKGETENCTSCISSGCAGRGNDELGAHSTNEKLLIKQWNVINLERNYAKGRDKKKDKGKTKVVINENEIGELTNIENLKKNMTIAINQLENDFIKHLSLRSTTGAIESIVVDLDGKEHTLQELAQIIRKNPKTVVLNFINFPQAIPAALKAIEKSGMNLSPQQDGTTLFIPVPKVTKEHRESLSKNAKQLFIKCRTTVKDVQQKHIKQIKRNTKISEDSARHVEQQIIALADQYVAEAEALFQKKHNELLGEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01216149;
- 90% Identity
- iTF_01216149;
- 80% Identity
- iTF_01216149;