Pcyl002175.1
Basic Information
- Insect
- Platypus cylindrus
- Gene Symbol
- -
- Assembly
- GCA_949748235.1
- Location
- OX456488.1:19953862-19960104[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.95 1.4e+03 -0.5 0.1 21 40 35 54 31 61 0.74 2 11 0.075 1.1e+02 3.0 0.1 21 46 63 88 55 94 0.79 3 11 0.088 1.3e+02 2.8 0.0 22 44 92 114 88 119 0.87 4 11 0.0017 2.4 8.3 0.0 21 45 147 171 129 178 0.84 5 11 0.071 1e+02 3.1 0.0 21 43 203 225 189 230 0.84 6 11 0.0086 12 6.0 0.0 21 46 231 256 224 262 0.88 7 11 0.35 5e+02 0.9 0.0 23 43 261 281 257 286 0.83 8 11 6.1 8.8e+03 -3.1 0.0 22 30 292 300 290 309 0.86 9 11 0.055 79 3.4 0.0 21 45 319 343 312 346 0.83 10 11 0.023 33 4.7 0.0 21 43 347 369 345 374 0.88 11 11 0.086 1.2e+02 2.8 0.1 21 43 375 397 371 406 0.86
Sequence Information
- Coding Sequence
- ATGGTACATTTCAACTTCTACAGTCCTTGGTACGAAAGCACCAATGCTGGTAATACAATTAATCGACTATCGCGCTTTATGGACCATAAGAGAATTCACACtggagAAAGACCGTATAAATGCGAAATTTGCGATAAGAGGTTTATTGCATCAACGCAATTAACGGCACATAAGAGAgttcacactgGAGAAAGACCAtttaaatgtgaaatttgCGGTATTGCATTTGCTCAACAATCGACTTTAATAAAACATGCGAGAATTCACACAgGAGATAAACCATATAAATGCGAAATTTGTGGTGATGTATTTGCTCAAGAATGGAATTGGACGTGCCATATACGAGctcacactgGAGAAAAGCGATATAAATGCGAAATCTGCGGTAAAAGATTTGCACAACCAGGCCACTTAGCGAGCCATAAGCGAATTCACACtgGAGAAAAACCGTATAAATGCAAAATTTGTGGTGATGCATTTTCTGAGTCAGGGAACTTAGCGAGGCATAAGAGAATTCACACTAgAGAAAAACGATTTAAATGCGAAACTTGCGGTAATACATTTGCTAAATCACAGCACTTAATGGAGCATAAGAgaattcacactgGAGAAAGGCCATTTAAATGCGAAATTTGCGGTAATGCATTTGCTCAACAATCGACCTTGACAAAACATAAGAGAATTCACACtggCGAAAGACCAtttaaatgtgaaatttgTGGTAATACATTTGCTCAACGATCGAACTTGACGGACCATGTGAaaattcacactgGAGAAAAACGATTTAAATGCAAAATATGCGATGATGCATTTACTCAGCAATCGGCTTTAAGAAGCCATAAGAGAactcacactgTTAATATTTCAGAAGAAAAACCATTGAAATGCGAAGTTTGCGGCAAACCATTTGATCATCAATCGGTCTTGATGAACCATATGAGAgttcacactggagaaaaaccatataaatgtgAAATATGTGGTAGTGCATTTACTCGACACTCGAATTTGATTGACCATATGAgaattcacactggCGAAAGACCGTATAAATGTGAAATATGCAATAATACATTTACCAAATCAGGTAACTTAGCGGTGCATAAGAgaattcacactgGAGAAAGACCCTATAAATGCACAATTTGTGGTAAGGGGTTTACTCAACAATCGTCCTTAATTAGACATTCAGGCAATCACACCGAtaagaaaccattaaatgaaatcttttgttaa
- Protein Sequence
- MVHFNFYSPWYESTNAGNTINRLSRFMDHKRIHTGERPYKCEICDKRFIASTQLTAHKRVHTGERPFKCEICGIAFAQQSTLIKHARIHTGDKPYKCEICGDVFAQEWNWTCHIRAHTGEKRYKCEICGKRFAQPGHLASHKRIHTGEKPYKCKICGDAFSESGNLARHKRIHTREKRFKCETCGNTFAKSQHLMEHKRIHTGERPFKCEICGNAFAQQSTLTKHKRIHTGERPFKCEICGNTFAQRSNLTDHVKIHTGEKRFKCKICDDAFTQQSALRSHKRTHTVNISEEKPLKCEVCGKPFDHQSVLMNHMRVHTGEKPYKCEICGSAFTRHSNLIDHMRIHTGERPYKCEICNNTFTKSGNLAVHKRIHTGERPYKCTICGKGFTQQSSLIRHSGNHTDKKPLNEIFC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01216128;
- 90% Identity
- iTF_01216128;
- 80% Identity
- iTF_01216128;