Pcyl000531.1
Basic Information
- Insect
- Platypus cylindrus
- Gene Symbol
- -
- Assembly
- GCA_949748235.1
- Location
- OX456488.1:2999249-3002561[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.0079 11 6.1 0.1 18 46 70 98 65 105 0.82 2 4 0.42 6e+02 0.6 0.0 22 46 102 126 99 132 0.77 3 4 1.8e-06 0.0026 17.8 0.5 22 46 130 154 123 159 0.90 4 4 0.0018 2.5 8.2 0.3 23 51 159 187 155 190 0.84
Sequence Information
- Coding Sequence
- ATGGATGAGAACACATCGGATTTAAGAGCACCTACAAAAAAATTAGTCGACGAGGAAGATCCAAATGTTTCGGAAAATCAAAAGGATAAAAACGCGATCGAATCGGACTTGGCTACACAATCAGTTGATAATTCTGATTCAGATAATTCGCAGATCATAAATAACGAAATAGAAACAGAACAACATGAAGTAGATCCAGAAGGTGAAAAAAGCCAAGaTGATAAGCCATATAAATGCAAATTCTGCCCTTATGCAAGTACTCAAGCAGCAAACTTAGCGGTCCATAAAAGAATTCATACTGaTGATAAGCCATATAAATGCAAATTCTGCCCTTATGCAAGTACTCAAGCAGCAAACTTAGCGGTCCATAAAAGAATTCATACTGgTGATAAGCCATATTTGTGCGAAATTTGCGGTAAGGCAATTCGTCAACACAGTAACTTACAAAGACATTTAAGAATTCACACCaAAGAAGAAACATATCAATGCCCAGAATGCAATAAGAGGTTTAATCAACCACGTCACTTAGACTACCACTTGAAATTGAGGCCAGGTAATAACCCATCAATCGCATTTGGAGATCGTGAGTTTATTTCTACCTTGAGAAATATTTCAGGAACTGAATCATCTGAAGCTGAATCATCTACAAGTTCATCATATCAAAGCgataattga
- Protein Sequence
- MDENTSDLRAPTKKLVDEEDPNVSENQKDKNAIESDLATQSVDNSDSDNSQIINNEIETEQHEVDPEGEKSQDDKPYKCKFCPYASTQAANLAVHKRIHTDDKPYKCKFCPYASTQAANLAVHKRIHTGDKPYLCEICGKAIRQHSNLQRHLRIHTKEETYQCPECNKRFNQPRHLDYHLKLRPGNNPSIAFGDREFISTLRNISGTESSEAESSTSSSYQSDN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01216281;
- 90% Identity
- iTF_01216281;
- 80% Identity
- iTF_01216281;