Pcyl006720.1
Basic Information
- Insect
- Platypus cylindrus
- Gene Symbol
- -
- Assembly
- GCA_949748235.1
- Location
- OX456489.1:2946458-2948291[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.00013 0.18 11.9 0.0 19 51 76 108 70 109 0.89 2 3 6.4e-05 0.091 12.8 0.0 21 46 106 131 104 134 0.92 3 3 0.061 87 3.3 0.1 26 44 139 157 137 161 0.88
Sequence Information
- Coding Sequence
- ATGGATAACGGCACATTTCAACGAGATTTTGAGATACCTCCACCAGACGTATTGAATTCAATCGCGGAACAAGTTCTAGACGAGTTACTAAATTTAGAAGTTGATAAAAAGGTGGAATCAGGTGCGGCTGCACAATCAGTTGATCCTGCCAATTTGGATATTTCGCAGTCCTTACGTAGTGAAATTGTAACAGaagaaaaacagataaatcCTGAAGTTGAAGCAGGACAAggtgaaaaaccatATCAATGTGAATTTTGCGGTGTAGCATTTCGTCATCGACAAAATTTGAATGACCATTTAAAtattcacactggTGAAAAACCACACAAATGTGAAATTTGCGGTGCAGCATTTCATGCAGCATCGAATTTGAGGGATCATGTGTCATTACACACTGGAATATGGCGATATACATGTCAAATATGCGGTTATGGATTTAATCATCCATCGAATTTAAAGAGACATTCAAAAACTCACACTGATCTCGAATCTAATTCTACTTTAACAAATAATTCAGGAAATGAATCACCTAAAGCGGGACAATCTGGATtttcatcaaaataa
- Protein Sequence
- MDNGTFQRDFEIPPPDVLNSIAEQVLDELLNLEVDKKVESGAAAQSVDPANLDISQSLRSEIVTEEKQINPEVEAGQGEKPYQCEFCGVAFRHRQNLNDHLNIHTGEKPHKCEICGAAFHAASNLRDHVSLHTGIWRYTCQICGYGFNHPSNLKRHSKTHTDLESNSTLTNNSGNESPKAGQSGFSSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01216332;
- 90% Identity
- iTF_01216332;
- 80% Identity
- iTF_01216332;