Pcyl006706.1
Basic Information
- Insect
- Platypus cylindrus
- Gene Symbol
- -
- Assembly
- GCA_949748235.1
- Location
- OX456489.1:2896949-2898965[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.24 3.5e+02 1.4 0.0 22 48 79 105 71 109 0.78 2 4 0.052 74 3.5 0.1 21 48 106 133 103 137 0.86 3 4 3.5e-05 0.05 13.7 0.1 21 51 134 164 130 165 0.87 4 4 8e-05 0.11 12.5 0.1 21 46 162 187 160 190 0.92
Sequence Information
- Coding Sequence
- ATGGATGAGGACAATGTTCCATTGGATTTGAGTATATCTAGAAAAGAACCATCAAATTCAGTCGAGGCACCACTTCCAGATGCCTTGCCAAATCAAGAAGTTGACAAAAAGATCGAATCAGGTGCGCCTGCCCAATCAGTTCATCCTGTCAATTTGGATATTTCGCAGTCCTTACGTAGTGAAAttataacagaaaaaaaacagataaatccTGAAGATGAGGCAGGACAAgGAAAAAAACGATTTGCATGTCCAGAATGTCGGAAGTCATTTGGATGGAAATGGGACTTGAATAGACATCTGATGATCCACACTGgtgaaaaaccatataaatgtgaattttgcgGTGTAGCATTTCGTCATCGACAACATTTGAATGAGCATGTAAAAATTCACAgtgatgaaaaaccatataaatgtgAAATTTGCGGTGCAGCATTTCGTCAACGTGCACATTTGAATGACCATTTAAAtattcacactggTGAAAAACCACACAAATGTGAAATTTGCGGTGCAGCATTTCATGCAGCATCGAATTTGAGGGATCATGTGCGATTACACACTGATCTCGTATCTAATTCTACTTTAACAAATAATTCAGGAAATGAATCACCTAAAGCGGGACCATCTGGATGttcatcaaaataa
- Protein Sequence
- MDEDNVPLDLSISRKEPSNSVEAPLPDALPNQEVDKKIESGAPAQSVHPVNLDISQSLRSEIITEKKQINPEDEAGQGKKRFACPECRKSFGWKWDLNRHLMIHTGEKPYKCEFCGVAFRHRQHLNEHVKIHSDEKPYKCEICGAAFRQRAHLNDHLNIHTGEKPHKCEICGAAFHAASNLRDHVRLHTDLVSNSTLTNNSGNESPKAGPSGCSSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01216286;
- 90% Identity
- iTF_01216286;
- 80% Identity
- iTF_01216286;