Basic Information

Insect: Platygaster robiniae
Gene Symbol: salm
Assembly: GCA_028476575.1
Location: CM052020.1:42274498-42289886[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 4.2e-06 0.0015 20.7 0.9 1 23 377 399 377 399 0.98

2 10 8.4e-06 0.0029 19.7 2.1 1 23 405 427 405 427 0.98

3 10 0.053 19 7.8 3.8 2 23 774 795 773 795 0.98

4 10 3.6e-08 1.3e-05 27.2 0.6 1 23 801 823 801 823 0.97

5 10 0.00022 0.076 15.3 2.4 1 23 833 855 833 855 0.98

6 10 0.0022 0.76 12.2 2.1 2 23 1161 1182 1160 1182 0.97

7 10 0.041 15 8.1 0.9 1 13 1188 1200 1188 1201 0.94

8 10 7 2.5e+03 1.1 0.0 13 23 1326 1336 1324 1336 0.89

9 10 1.2e-06 0.00041 22.4 4.0 3 23 1442 1462 1440 1462 0.96

10 10 1.7e-07 5.9e-05 25.1 0.9 1 23 1468 1490 1468 1490 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	4.2e-06	0.0015	20.7	0.9	1	23	377	399	377	399	0.98
2	10	8.4e-06	0.0029	19.7	2.1	1	23	405	427	405	427	0.98
3	10	0.053	19	7.8	3.8	2	23	774	795	773	795	0.98
4	10	3.6e-08	1.3e-05	27.2	0.6	1	23	801	823	801	823	0.97
5	10	0.00022	0.076	15.3	2.4	1	23	833	855	833	855	0.98
6	10	0.0022	0.76	12.2	2.1	2	23	1161	1182	1160	1182	0.97
7	10	0.041	15	8.1	0.9	1	13	1188	1200	1188	1201	0.94
8	10	7	2.5e+03	1.1	0.0	13	23	1326	1336	1324	1336	0.89
9	10	1.2e-06	0.00041	22.4	4.0	3	23	1442	1462	1440	1462	0.96
10	10	1.7e-07	5.9e-05	25.1	0.9	1	23	1468	1490	1468	1490	0.98

Sequence Information

Coding Sequence: ATGCAACTTATGCGGTGGAGCATCACCAGACGCTTGGACAGCAACGCCAGGGAGCGCAAGGATCCCAGGGGTTGCAAAGAAGATGGTCAGAGGCTGTCGCTTTCTGGCGAGGAAAATGAGTCGGCCTCCGAGGGAGAGGAGAGCGCGCCGGAAGGGGCCGTGGACCTGCGAGCGGTGCCTCGTTCCCAGCAACCGGCGGACGAGGACGAAGAGGAGGTGCCTATGGAGGACGAAGAGAAGGACGTCACGACCGGAGGTGCAGCTGGGGCTGGCGCCGTGGAAAAGCAACCAGAGAAACCGAAGCCACAGCTGGACGACGACGAGGAGGACTCGCGAAAGCGCATGCACCACAGGCAGGACGCGGAGAACAACAACAGCAGCTTCGTCGGCGAAGGCGCGGCCATTTTTCCACCGGCCGGAACTAGTCACGTCACTCTCGAAGCCCTGCAGAACACGAACGTCGCTGTGGCCCAGTTTGCCCCACCCGCGCCTCTCTCCGGCAACCCCGAAAGCGACGCCGTGCTCCAGGAGCTGGCTCTCCTCTACACGATCCAGCAGCAACACCAGGTTTTCCAGCTGCAGCTCATCAACCAAATCCAGCAGAAGCTCTCGATAAACCAGAACAGCAGCGGAGGCCAAGCGAGCCAGCCCGAGGCGAACGACGAAAAAGTCTCGCCTACGCTGGCGTCGCCCCTGATGACCTCCACATCCCCGAGCCACCGTCAACGTCAGGAGGCCACCCCTACCTCCCCGTTGCCCCTGACGACATCGAGTCAGCAGGCTCCGGAAAAGCAGGAGCTGCCCGTTGAGCTCTCGCCACCGCCAGAAATGGCGGTTCACCTTCACGGGAATGTCGGGTCGATGTCACACCAGATACCGGCGCTGTGCAGTATCAGCTCGTCTCTAGCCTCTTCCATCATCACCAACAATGACCCGCCCCCGCTGAACGAGCCCAACACCCTGGAGATGCTGCAGAAGCGCGCTCAAGAGGTGCTGGACAACGCGAGCCAAGGACTTTTGGCCAACAACCTTGCAGATGAGTTGGCCTTTCGCCAGCAGAGCAAGGGCTCGCGCCTATCGCCCTATGACTCGAAATCTGGAGGTGGGCGTGGAGAGCCCTTCTTcaagcaccgctgtcgctactgtggcaaggtttttggcagcgactcggccctccagattcacattcggtcccacacaggtgagcgaccctttaagtgcaacgtctgcggcagtcgcttcaccaccaaaggcaacctcaaggtccacttccagaggcacacggccaaattccccCATGTCCAAATGAACCCCAACCCCATCCCCGAGCATCTTGACAAGTTTCATCCACCCCTTCTTCAACAGCTCGCCGCCTCGGGCCAGAGGTCCATTCACTCCCCACCACCCCCGCCTTTGCCTGCGTTACCAACCCAACAACAGCAACAACCGCCCCCACCCCCATTCCACGCAACCACGTCATCGACACCGACGACCACGGCTACGACGACGGTTCACCCATTTCTACATCAGTCCTCGTCGCCTGTAATGCCACCCCTCAGTCTTGCCATTCCCGGCATGCCAGCCCTTTACCATCGACCACCCCACCTCCTCCCTAATCATCACCGAGACCACCACCGAGACGATCAGCAAGTCCCGGAAAACCTGAGCAAGTCCTCAAACAACAACAACAACAGCGCCCCATCGCCGAAGTCGCCCTCTCAAAACCAACACGACAAAGTCGACATCAAGCTTGAGCGACAGTCACCGCCTCCCCAAAATGAGCGCGTCACGCCCAAACGGGAACCCGAAGACGTCGAAGATGACGTCAAGGATGACGACGGCAGAGACGATGTTGTTGCGAAGGGCGTCGTCTCCTTCGAGGACTGCAGCATGGACAGTAAGGTCAGCGACGGCGCTGGAGACGTGATGGCCATGATGATGGAAGCCGAAGATGAAGATGGTGAAGAGCAGCCTGAAAACCTCTCGAATCGGCCCAACCGTGCGGTTCCGCAGCAGCAATTCCATAGAGGGGGAGTGTCGCCAGCCAGTAGCAATGCCAGCAATAGCAGCCTTCAGACAAGCTTTGCCGGTATCCTGTTCCCCCAGCAACAAACGAGCGTCGCCTCTTTCCACGAGCGTGCCGATCAGGTAGGCAGCGTCGATCCAGCCCGTGATCCCGCCATCTACTCGAACCTGCTGCCACGTCCCGGCAGCAACGACAACTCCTGGGAGAGCCTCATCGAAATCACCAAGACCTCCGAGACGTACAAGCTCCAGCAGCTCGTcgacaacatcgaacacaagctcaccgacccgaaccagtgcgtcatctgccacagggttctctcgtgcaagagcgcccttcagatgcactatcgcacgcacacaggcgagcggccattcaaatgcaagatttgcggccgtgctttcaccaccaaaggcaacctcaagacgcacatgggcgtgcatcgcgccaagccaccgctgcgcgtcctccaccaatgtcccgtctgccacaaaaagttcaccaacggtatcgttctccagcaacacatacgcctccacacaggcgaacCCACTGACCTCAGTCCTGAACAAATTCAGGCAGCCGAGGTCAGCGACTTCCCCCCTGCGGCTGCAGCAGGATCCTACTCCCATCACCTTGCTCCCTTCCTACCCCAGGGCTTTCTCGGGCCCACCGGCCACCCTGGCTTTCCCCTGGCCTTTCCCCCAAGAGCACACTCTCTCAGCGAAAGTGATCTCGCATTGCGCCAACATCACCATCAACTCCAGCACCACCAACAACAACAGCAACAACAGCTGGACTGTGGGAACGAGGATGAAGACGAGGACATTAGATTCGACGACGAGGACGACGAAAGGCGTGACAGCTTAGCTGATGAGGATGAAGACTGCAAGGATCCGGAGGATGCAGTAGCAGAATCCAAGGACATAATGCCTTCTTTTTCGACTTCACTAGCTGCCCTCGAGAACCAAGTGCGAACCATCACGACCATGGCCTCTAGAtcctcggcttcgcctccgacatcattgtccagtcatcgtcatcttcatcaccaccatcaccatcaacgttacaacggtggcagcgACAAAAGCGCCAGTCCTCCCAGCAATGGCACGCCTCTTGACCTCACGCCTCGGGCCTCTTCCACCCCGACTTCTGCACCTTCCACCCCAACACCACCCCCGCCCCCGACACACGTCCAAAGTACACCTGGACCACCACCCCCGCCCCATCCGTTTGGTGTGTTCGCTGGTTTACTTCAGGCAGCATCGTCTTCGTCCCCTTCGAGTCATGGACTGGCCAGTAGCGTCGTCAATAGTATCGCACCCATCGGCGCAAGTAACCCCGTAGGACCTTTGGCTTCTCTCACAACTTCGGCCGTCCTCGCTGCGACTTCGACCTACAACCCCCTGGGCCTGGCCGTGGGTGGGCCAGCAGtgcgcggtaacacaacgtgcaacatttgcttcaagactttcgcgtgcaattcggccctcgagatccactatcgcagtcataccaaggaaaggccgttcaaatgcaccatttgcgatcggggcttctcgacgaaggTAATTATGAAATTGGTGTCTGACGGTGCCGGTAATGTAGACGTGTCAATTCGGAAATCACTAGGTGCCACGAAATCGTATAACTTTGATATGATAACGTTCTGGTTGCAAAACGGTTGCGATTGCGTAAAAAAAGAAAGAAACGGATTCGATGACGAGCCTATTAAAGTGCAACATTACCGAGAATTCCGGGCGCTACTGACGATACCGAAGACAAGGCCCGAGAATCGCAAGAACCGGGGGCGGCGAAGGCCCGAGGGGGGGCGCGGACTTACCTCTTCGAATGCCCCAGCTATTCGCGAGGACGACGTCCGCCTGCCCCCGCTGATGCCGCCATCCGCCCTCGGACTTGTCTTTACCTCGGAACCCGTTTTTCCGGGCAACATGAAGCAACACATGTTGACACACAAAATCCGAGACATGCCATCGCATCTATTCAGCGACATGAAagctgcagcgacagggattcagcaacagcaaccattgcaactgcaacagcaATCTAGCCAAGAACACGAGTCATCTACGAGTCCTCTACGCTCGGAGGATAACTCGATGACAGCGCCACCACCGCCTCCGCCACCGCCTCCACCTCCACCGCCCCCACCACCCCCGCCAATGCCGCCCATGGCGCCCTCTACAGTCGAACCCACGAAAAGATCAGCCCCAGAAAGTGAGCTTCCCGCACCAAAAAGGCCGCCTAgcatgtccagcaagcacttgtgccatgtttgcaataagaatttctcctcgtcctcggccttgcagatacacatgagaactcataccggtgacaagcctttcaagtgtcaagtctgccaaaaagccttcaccaccaaaggcaatctcaagGTACACATGGGCACACATATGTGGACAAACGGAGCGTCGCGACGCGGCAGGCGAATGTCCCTGGACCTGCCACCCCTGCCCATCACCCCCAAGGACTCGGAATTCCTGCAACGACGCCCGGATCTCTTCTATCCGTACCTTCCCGCGCCGTTCCTTAACGGTGTTCAACAAAAGCTGAACGAGGTCTCGGTGATTCAGAGTGGCAACGGCCTGATGAACGCGATGAGCAACAAGTACGCCGGGATTTTCGGCTCTGTTTACGGCGGTGCTGGAGGAGGATTCCCCATGGATAAGGCACCTCCAGGAAGTGAGAGCAAATCGCGAGTTGCCACGGGCTCCATGCTGTTCCAGGGCGAAGCTTCGCCAACGCACTCGCCTGGGGCAGCCTCGCCTTCGCCATCGTGGCACTCTCCGGGCACGGATCAGTCCCTTCATCGGCATCATCATCACCACGTCCACGAGGTGGTTGAAGGTCAAAGGGCAGAGACTGCGACCCCTCCGTCGGTCACGGCGCACCTGCCCCCGAGGGAAGGTCTGGCTGCACGAGAAAACGCCAAAGAAACAAATTGTCGGCGTCGCGTCGGCAGCATATGCATTTATAAGTACTTTTGCGAAAAAGGGCCCACGTCAGCGTTTAAACATATCCCTCGCGAGCCGACGGACGAGACACCATGTTCCTATTGTTACACTAGTCTTACATACCTTGTAAAGTACGACCGACTCATGTCCAACCGGGTTTCGACGTGCATCGCAGACTTTCAAGTAGCCTATGCTTTTCTTTTTTGGGTGTCTAGGGCACTTGGGAAACGATGA
Protein Sequence: MQLMRWSITRRLDSNARERKDPRGCKEDGQRLSLSGEENESASEGEESAPEGAVDLRAVPRSQQPADEDEEEVPMEDEEKDVTTGGAAGAGAVEKQPEKPKPQLDDDEEDSRKRMHHRQDAENNNSSFVGEGAAIFPPAGTSHVTLEALQNTNVAVAQFAPPAPLSGNPESDAVLQELALLYTIQQQHQVFQLQLINQIQQKLSINQNSSGGQASQPEANDEKVSPTLASPLMTSTSPSHRQRQEATPTSPLPLTTSSQQAPEKQELPVELSPPPEMAVHLHGNVGSMSHQIPALCSISSSLASSIITNNDPPPLNEPNTLEMLQKRAQEVLDNASQGLLANNLADELAFRQQSKGSRLSPYDSKSGGGRGEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHFQRHTAKFPHVQMNPNPIPEHLDKFHPPLLQQLAASGQRSIHSPPPPPLPALPTQQQQQPPPPPFHATTSSTPTTTATTTVHPFLHQSSSPVMPPLSLAIPGMPALYHRPPHLLPNHHRDHHRDDQQVPENLSKSSNNNNNSAPSPKSPSQNQHDKVDIKLERQSPPPQNERVTPKREPEDVEDDVKDDDGRDDVVAKGVVSFEDCSMDSKVSDGAGDVMAMMMEAEDEDGEEQPENLSNRPNRAVPQQQFHRGGVSPASSNASNSSLQTSFAGILFPQQQTSVASFHERADQVGSVDPARDPAIYSNLLPRPGSNDNSWESLIEITKTSETYKLQQLVDNIEHKLTDPNQCVICHRVLSCKSALQMHYRTHTGERPFKCKICGRAFTTKGNLKTHMGVHRAKPPLRVLHQCPVCHKKFTNGIVLQQHIRLHTGEPTDLSPEQIQAAEVSDFPPAAAAGSYSHHLAPFLPQGFLGPTGHPGFPLAFPPRAHSLSESDLALRQHHHQLQHHQQQQQQQLDCGNEDEDEDIRFDDEDDERRDSLADEDEDCKDPEDAVAESKDIMPSFSTSLAALENQVRTITTMASRSSASPPTSLSSHRHLHHHHHHQRYNGGSDKSASPPSNGTPLDLTPRASSTPTSAPSTPTPPPPPTHVQSTPGPPPPPHPFGVFAGLLQAASSSSPSSHGLASSVVNSIAPIGASNPVGPLASLTTSAVLAATSTYNPLGLAVGGPAVRGNTTCNICFKTFACNSALEIHYRSHTKERPFKCTICDRGFSTKVIMKLVSDGAGNVDVSIRKSLGATKSYNFDMITFWLQNGCDCVKKERNGFDDEPIKVQHYREFRALLTIPKTRPENRKNRGRRRPEGGRGLTSSNAPAIREDDVRLPPLMPPSALGLVFTSEPVFPGNMKQHMLTHKIRDMPSHLFSDMKAAATGIQQQQPLQLQQQSSQEHESSTSPLRSEDNSMTAPPPPPPPPPPPPPPPPPPMPPMAPSTVEPTKRSAPESELPAPKRPPSMSSKHLCHVCNKNFSSSSALQIHMRTHTGDKPFKCQVCQKAFTTKGNLKVHMGTHMWTNGASRRGRRMSLDLPPLPITPKDSEFLQRRPDLFYPYLPAPFLNGVQQKLNEVSVIQSGNGLMNAMSNKYAGIFGSVYGGAGGGFPMDKAPPGSESKSRVATGSMLFQGEASPTHSPGAASPSPSWHSPGTDQSLHRHHHHHVHEVVEGQRAETATPPSVTAHLPPREGLAARENAKETNCRRRVGSICIYKYFCEKGPTSAFKHIPREPTDETPCSYCYTSLTYLVKYDRLMSNRVSTCIADFQVAYAFLFWVSRALGKR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01214302;
90% Identity: iTF_01214302;
80% Identity: -