Basic Information

Insect: Platygaster robiniae
Gene Symbol: su(Hw)
Assembly: GCA_028476575.1
Location: CM052028.1:23899012-23903934[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.015 5.4 9.5 0.1 1 20 69 88 69 90 0.92

2 13 2.4e-05 0.0083 18.3 1.0 1 23 174 197 174 197 0.96

3 13 0.0011 0.4 13.0 3.4 2 23 204 226 203 226 0.95

4 13 3.1e-05 0.011 18.0 3.5 1 20 232 251 232 253 0.95

5 13 5.3e-08 1.9e-05 26.7 2.5 1 23 264 286 264 286 0.98

6 13 0.0003 0.1 14.9 0.4 2 23 296 317 295 317 0.97

7 13 0.033 12 8.4 0.7 2 23 324 345 323 345 0.96

8 13 4.4e-05 0.015 17.5 1.9 1 23 351 373 351 373 0.98

9 13 5.8e-06 0.002 20.3 1.1 1 23 379 401 379 401 0.96

10 13 1.9e-05 0.0067 18.6 1.3 1 23 407 430 407 430 0.94

11 13 2.6e-06 0.00093 21.3 0.7 2 23 437 458 436 458 0.94

12 13 3.1e-07 0.00011 24.2 2.1 1 23 464 486 464 486 0.98

13 13 0.00027 0.096 15.0 2.2 2 23 493 515 492 515 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.015	5.4	9.5	0.1	1	20	69	88	69	90	0.92
2	13	2.4e-05	0.0083	18.3	1.0	1	23	174	197	174	197	0.96
3	13	0.0011	0.4	13.0	3.4	2	23	204	226	203	226	0.95
4	13	3.1e-05	0.011	18.0	3.5	1	20	232	251	232	253	0.95
5	13	5.3e-08	1.9e-05	26.7	2.5	1	23	264	286	264	286	0.98
6	13	0.0003	0.1	14.9	0.4	2	23	296	317	295	317	0.97
7	13	0.033	12	8.4	0.7	2	23	324	345	323	345	0.96
8	13	4.4e-05	0.015	17.5	1.9	1	23	351	373	351	373	0.98
9	13	5.8e-06	0.002	20.3	1.1	1	23	379	401	379	401	0.96
10	13	1.9e-05	0.0067	18.6	1.3	1	23	407	430	407	430	0.94
11	13	2.6e-06	0.00093	21.3	0.7	2	23	437	458	436	458	0.94
12	13	3.1e-07	0.00011	24.2	2.1	1	23	464	486	464	486	0.98
13	13	0.00027	0.096	15.0	2.2	2	23	493	515	492	515	0.93

Sequence Information

Coding Sequence: ATGGGTGAAGTGGACGAAGTTATAGAAATCATCCAGTTTGAAGAAAACATTATTTTAAAAGGAGATCCATCCGAAGAAATTATTGATCCCCTTGGTCTAAAATCTGATGTTCAAGAAGAATATATTCTTGAAGAGGTCACAAGCATTGAAAATTTGAATGGCATTTTACCCCAAAACAGTCAAATAGTGCATATAGTCACGGATTATGAATGCGTCACGTGCCACAGAGTATTTCAAGCTGAAGATTTGCTGAAAGAACATTTGGAGGTATGTCGAGAAGAAGATGATGGCATTGACCTCCTCGAAATTGGTAATTTCAACAATTACGATTCCGAAGAAGAAGAAGAAGAAGAAGACGAGAACGAAGAAGATGCCGATGATGCAGAATATGATTCAGACGTGAAAACAGAAGATATCAAGATCAAGAACAATAATTGCAAGCCTGAAATAAAGCCAGTTCCGGAAACCCAGTGCCACTGCTGTGGAGAAGATTTAGACAAAGCCCATGGTGGTGGAGCCTACAAGTGTTCCAGCTGTGATCTCTCGTTCAAGAAAATTTCCTCATTGAAGAGACATACCATAGTCATCCACTGGGAAAATGAATCTTGCATTTGCAAAGATTGCGGTGACACGTTTCGCGACAAGAAATCTCTCGACAAACACTACTACACTACCCATGTCAAAAGCAAGGTCTTCAGGTGTGAGCAGTGTGACAGATATTTCTCCAGGAGCTACCATTTGAACAGGCACAAGACCCAGTCGGGTTGCCATGGCTCTATTAAAACCATTTTTACATGTCAGgtctgcagcaagacgttcacgcgcaaggacaatttgcgagagcatttgcgctcgcacgctggccagtctcagcgccagaaaaagccttgcaagttctgccccaaggagttcatcacaacccaacagctggtgatccatgaacgcatgcacacgggcgagcggcctgtcgagtgcgacctctgctccaagacctttctctcgactttggccatgaagaagcaccgccgtgtccatacgggcgagaaacccttcgaatgcaaATTCTGCCAGAGGAGGTTcgcagctcgagaaacgctcaacagacacgaaagaactcacactggggacaagccacacgtctgcaacttttgcaacaagtccttcatacaagcggcgcagctccgagcccacatcttcaaccacacaggtgaaaatggcttcaactgcgacatctgtggcaaggcttttaaccgcaaaacccgcttgaatgtgcacaaaaagtttgtgcacgagggtgcggagcctctaccatgcaacctctgcgacaagaccttcactaggaaggaagacctggtgaagcataCCACTCTCCACAGCGGAGTTAAACCTCACAAATGCGGCAAGTGCAACAAGTCTTTTGCGGCCAAGTCCTCGCTGCAGGCGCACATGAACACCCACCGCAGGGAGCCGCCCCAGTCGTGCGCCGAGTGCGGACGTGCCTTCATACGCCACGACTGTCTGATGCGACACGTGAAGGCCAAACACCGAGAGCTACTCGAAGATGCCAAGAGCGAGGCTGAGAAGCTACATCTCAAACAACAGTTCCTTAACATCGCCTCCTCCGCCGCGGAAAAGCTCAAGTCCGGCGAGTCCAACATCTTGTCCACTGATGACTTGCTCAAGTGCATTGTGGAGCTTCTCACCGTTTTGATCGAGGAAGAGACCTTGCAAATGTTCGGCTGGACCGAGGCCCCCGTGCAAGATGTCCTGGAAGCGGTCATAAGACGATGCGGTCACGAGCCACTCTCCTCTGACAATAACATGTCCTTCGCTCAGAGACTCAGGGAAAATGTCAAGCTGCTTTTTACCGCCGTCATTCAAGACAACACGGTCAAATCCCTGCTCACTACTCAGACTGTGGACGAAGTCATTCTTCACGTCTTGAAAGTTTCCAAGCAGACCGACCAAAAGCAATGA
Protein Sequence: MGEVDEVIEIIQFEENIILKGDPSEEIIDPLGLKSDVQEEYILEEVTSIENLNGILPQNSQIVHIVTDYECVTCHRVFQAEDLLKEHLEVCREEDDGIDLLEIGNFNNYDSEEEEEEEDENEEDADDAEYDSDVKTEDIKIKNNNCKPEIKPVPETQCHCCGEDLDKAHGGGAYKCSSCDLSFKKISSLKRHTIVIHWENESCICKDCGDTFRDKKSLDKHYYTTHVKSKVFRCEQCDRYFSRSYHLNRHKTQSGCHGSIKTIFTCQVCSKTFTRKDNLREHLRSHAGQSQRQKKPCKFCPKEFITTQQLVIHERMHTGERPVECDLCSKTFLSTLAMKKHRRVHTGEKPFECKFCQRRFAARETLNRHERTHTGDKPHVCNFCNKSFIQAAQLRAHIFNHTGENGFNCDICGKAFNRKTRLNVHKKFVHEGAEPLPCNLCDKTFTRKEDLVKHTTLHSGVKPHKCGKCNKSFAAKSSLQAHMNTHRREPPQSCAECGRAFIRHDCLMRHVKAKHRELLEDAKSEAEKLHLKQQFLNIASSAAEKLKSGESNILSTDDLLKCIVELLTVLIEEETLQMFGWTEAPVQDVLEAVIRRCGHEPLSSDNNMSFAQRLRENVKLLFTAVIQDNTVKSLLTTQTVDEVILHVLKVSKQTDQKQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01213505;
90% Identity: -
80% Identity: -