Pequ002512.1
Basic Information
- Insect
- Platygaster equestris
- Gene Symbol
- su(Hw)
- Assembly
- GCA_030522785.1
- Location
- JAPYZK010000429.1:58810-62690[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.04 6 8.6 0.1 1 20 69 88 69 90 0.86 2 13 3.6e-06 0.00053 21.3 0.4 1 23 173 196 173 196 0.95 3 13 0.0011 0.16 13.5 3.6 2 23 203 225 202 225 0.95 4 13 2.4e-05 0.0036 18.7 3.3 1 20 231 250 231 252 0.95 5 13 3.9e-08 5.8e-06 27.5 2.4 1 23 263 285 263 285 0.98 6 13 0.001 0.15 13.6 0.7 2 23 295 316 294 316 0.97 7 13 0.044 6.5 8.4 0.7 2 23 323 344 322 344 0.96 8 13 2.6e-05 0.0039 18.6 2.0 1 23 350 372 350 372 0.98 9 13 9e-06 0.0013 20.1 1.4 1 23 378 400 378 400 0.96 10 13 0.00011 0.016 16.6 1.1 1 23 406 429 406 429 0.93 11 13 1.9e-06 0.00028 22.2 0.6 2 23 436 457 435 457 0.95 12 13 1.8e-07 2.6e-05 25.4 2.3 1 23 463 485 463 485 0.98 13 13 0.00016 0.024 16.1 2.2 2 23 492 514 491 514 0.94
Sequence Information
- Coding Sequence
- ATGGGTGAAGTTGGTGAAGTTGTAGaaatcctcCAGGTGGAAGAAAACATCATCATGAAAAGAGATCCAACTGAGGAAACATATGATCCTTTGGCTATAAAATCTGATGAGTCCGAAGAGTTAATTCTTGAAGAAATTGAAACCATGGACGACTTGAACGGCATCCTGCCCCAAAACAGCCATGTTGTGCACATAGTGACAGAGTACGAATGCGTCACATGTCACCGAGTATTTCAAGCAGAAAATTTGCTGAAAGAACACTTGGAAGTCTGTCGAGAAGAAGATGATGGCATCGACATCCTGGAGAttgggaatttcaacaattatgactctgaagaagaagaagaagaggaAGAGGACGAAGAAGACGCCGATGATCCAAATTATGAactagatgaaaaaaaaggagATTCCACGATTAAGAACAACAATCGCAAGCCTGAAATAAAACCAGTGCCAGAAACCCAGTGTCACTGCTGTGGGGAAGATTTGGCCAATTCTCACAAAGGTGGAGCCTACAAGTGTCCTAACTGTGATCTCTCCTTTAAGAAAATGTCCTCCTTGAAGAGGCATGCCATAGTTATTCACTGGGAAAGCGAATCTTGCGTATGCAAAGATTGTGGGGACACTTTTCGTGACAAAAAATCTCTTGACAAGCACCGTTATACCACTCACGTTAAGAGTAAGGTGTTCAGATGCGAGCAGTGCGACAGGTACTTTTCCCGGAGCTACCACTTGAACCGGCACAGAACTCAGTCGGGTTGCCATGGGACTATTCGGAACACTTTTTCGTGTCAGGTGTGTAACAAAACGTTTACGCGGAAAGACAACTTGCGGGAGCATTTGCGCTCGCACGCGGGCAGTTCCCAGCGCCAGAAGAAGCCTTGCAAGTTCTGCTCCAAAGAGTTCATCACGACCCAGCAGCTGGTGATCCATGAGCGCATGCACACGGGCGAGCGACCCGTCGAGTGCGACCTCTGCTCCAAAACCTTCCTGTCGACTTTGGCCATGAAAAAGCACCGCCGTGTCCACACGGGCGAAAAACCTTTCGAGTGCAAATTCTGTCAGAAGAGGTTCGCGGCTCGAGAGACGCTCAACAGGCACGAGAGAACCCACACGGGGGATAAACCTCACGTCTGCAAGTTTTGTAACAAGTCCTTCATTCAAGCGGCGCAACTTCGCGCCCACATCTTCAATCACACTGGTGAGAACGGCTTCAACTGTGACCTCTGCGGCAAGGCCTTTAATCGCAAAGCCCGCTTGAACTtgcacaaaaaatttgtgcatgAGGGGGCAACTCCTTTGCCCTGTAGCCTCTGCGACAAGACCTTCACCAGGAAGGAAGACCTGGTCAAGCATACTAATCTACACAGCGGGGTCAAACCTCACAAATGCAGCAAGTGCGACAAATCTTTCGCGGCCAAGTCTTCGCTGCAGGCGCACATGAACACTCATCGCAGGGAGCCACCCCAGTCGTGCGCCGAGTGCGGACGCGCTTTTATACGCCACGACTGCCTAATGCGACACGTGCGGGCCAAGCACCGCGAGTTACTCGAAGATGCGATGGGCGAGGCCGAGAAACAACAACTCAAGCTCCAATTCCTCAGCATTGCCTCTTCCGCCGCAGAAAAGCTCAAGTCTGGCGAGTCCAACATTTTGTCCACTGACGATTTGCTCAGGTGCATTGTCGAGCTTCTCACCGTTCTGATCGAGGAGGAGACTTTGCAGATGTTCGGCTGGACGGAGGCTCCCGTGCAGGATGTCCTGGAGGCAGTCATACGTCGATGCGGCCACGAGCCGCTCACCTCCGACAGTGACTTATCCTTCGCCGAGAGACTTAGAGAAAATGTCAAGTTATTGTTCACTGCTGTCATTCAAGACAACACGGTCAAATCCCTGCTCACCATCCAAACCGTCGATGAAGTCATTCTCCACGTACTGGAAGTTTCCAAGCAGACCAACCAAAAGTAA
- Protein Sequence
- MGEVGEVVEILQVEENIIMKRDPTEETYDPLAIKSDESEELILEEIETMDDLNGILPQNSHVVHIVTEYECVTCHRVFQAENLLKEHLEVCREEDDGIDILEIGNFNNYDSEEEEEEEEDEEDADDPNYELDEKKGDSTIKNNNRKPEIKPVPETQCHCCGEDLANSHKGGAYKCPNCDLSFKKMSSLKRHAIVIHWESESCVCKDCGDTFRDKKSLDKHRYTTHVKSKVFRCEQCDRYFSRSYHLNRHRTQSGCHGTIRNTFSCQVCNKTFTRKDNLREHLRSHAGSSQRQKKPCKFCSKEFITTQQLVIHERMHTGERPVECDLCSKTFLSTLAMKKHRRVHTGEKPFECKFCQKRFAARETLNRHERTHTGDKPHVCKFCNKSFIQAAQLRAHIFNHTGENGFNCDLCGKAFNRKARLNLHKKFVHEGATPLPCSLCDKTFTRKEDLVKHTNLHSGVKPHKCSKCDKSFAAKSSLQAHMNTHRREPPQSCAECGRAFIRHDCLMRHVRAKHRELLEDAMGEAEKQQLKLQFLSIASSAAEKLKSGESNILSTDDLLRCIVELLTVLIEEETLQMFGWTEAPVQDVLEAVIRRCGHEPLTSDSDLSFAERLRENVKLLFTAVIQDNTVKSLLTIQTVDEVILHVLEVSKQTNQK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01215439;
- 90% Identity
- -
- 80% Identity
- -