Pors037657.1
Basic Information
- Insect
- Platygaster orseoliae
- Gene Symbol
- egg
- Assembly
- GCA_030522825.1
- Location
- JAPYZL010130310.1:2112-4927[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.4e-13 2.5e-09 38.3 0.0 7 70 110 169 104 174 0.87 2 2 2.8 2e+04 -3.1 0.0 37 46 471 480 470 489 0.86
Sequence Information
- Coding Sequence
- ATGGCGCAGAAGCTAATATTGAATTCACCCTACGTTGAGTACACTAGTTCTGCTACTGAAACCGAAGAAAGGAAAGCGATGGAAAAACCGGTACCTCAACAACCAGCTCGATCCGTCGCCAAGAAAAGCACTACCAAAAAACCACCTCCCTCGCACACGGAATCCGAAATATTATCGGAGCTGGAAAACGCGAAACCTTCTCAAAGCATTGTCTATTACCAAACGCAGAACAAAATCCAAACTAAGAAATTCGTGCCTCACAAGTGTGGTCCGAAATGTTTGGATGGAATCACTTTCACTCCTGACGATATGAAAGGTTATTCGGCTTTGACGATTCCACTTTTGTGTGGATGGAACAGGCAATTATGCAAGTTTCCTGTCAACGGGGAAAAACAAGTCATTATGTACCAAACACCGTGTGGACTGAGACTTCGAAATATGCACGAGCTTCACAAATACCTGAGAATCACCAAGAGTCCGATGTCTGTGGATTTGTTTGACTTTGATTATTGGGTTCACCCATTGGCTGAGTTTACATTAGAGAAGTGTTTCGTGAATATCAGGgaCATAAGTTATGGCGTTGAAAACGTGCCAGTTCCATGTGTCAACGAATTGGATCATCAGCAACCGGACAGTATCACTTACACAACGAAACGAAAACCAAGTAAAGGCGTGCGCTTGAACACCAACCCAGAATTTTTGTGCGGCTGCGATTGCGAAGACGATTGTCAGGATAAAGAAAAGTGCGCGTGCTGGCAACTGACCATACAAGGCGCTACTCTGGGAGGTCTTGTGCCGAATTCTGAGGTTGGGTACAATTACAAAAGACTGCAGGAGCCAGTCACAACAGGAATATACGAGTGCAACTCGAGATGCAAGTGTAACGTGAAGACTTGTTTGAATCGAGTTGTTCAGCACCCGATGAACTTGAAACTGCAAGTTTTCAAGACAGCTCCAAGAGGTTGGGGCATTCGGTGTCTTAATGATATTCCTCATGGCTCTTTCATTTGTATTTATGCTGGAACAGTGCTCACGGAACAGGGCGCGAATGAAGGGGGCAAAAACTACGGAGACGAATACTTGGCAGAGCTGGACTACGTTGAAGTTGTGGAAGGAATGAAGCAAGGTTACGAAAAAGACGTTGTCGAACCTGAAGTTTTGGAAAACAAACAGGCTGAAAGTTTTTCGGTTGAAGAGAAAACGCAAGAAATTGTAAACGAAACTGATGACGATTCTCGAAGCTCAAAGGACGATCCGAATAGTATGAGGGAGAGGCTGAGAAAACGCAAACCCTTAATAAACAACAAGCAAGAGAAACCTTCGTCAGAGATGAGCGTCAGCGACGAAGAGTCGAATGACGCGAGAAGGGAACTTCGTAGAATCGACCTTTCTTTGAACTCTAAAATTAAAACTCCTCAGGGCAAGTCCTTGAGGGATTTTTATGGCGAAGACGAAGCCGTTTACATCATGGACGCGAAAAATGTCGGGAATCTGGGGCGATATTTGAACCATAGCTGCGATCCCAACGTTTTCGTGCAAAACGTTTTCGTCGACACCCACGACCTCAGACTCCCGTGGGTGGCCTTTTTCGCCTTGCGATTCATTCGCGCGGGACAAGAACTCACGTGGAACTACAGTTACGACGTTGGAAGCATTCCCGGGAAAATGATTGTCTGCAAATGCGGCGCGTTAAATTGCAGAGGgcgacttttataa
- Protein Sequence
- MAQKLILNSPYVEYTSSATETEERKAMEKPVPQQPARSVAKKSTTKKPPPSHTESEILSELENAKPSQSIVYYQTQNKIQTKKFVPHKCGPKCLDGITFTPDDMKGYSALTIPLLCGWNRQLCKFPVNGEKQVIMYQTPCGLRLRNMHELHKYLRITKSPMSVDLFDFDYWVHPLAEFTLEKCFVNIRDISYGVENVPVPCVNELDHQQPDSITYTTKRKPSKGVRLNTNPEFLCGCDCEDDCQDKEKCACWQLTIQGATLGGLVPNSEVGYNYKRLQEPVTTGIYECNSRCKCNVKTCLNRVVQHPMNLKLQVFKTAPRGWGIRCLNDIPHGSFICIYAGTVLTEQGANEGGKNYGDEYLAELDYVEVVEGMKQGYEKDVVEPEVLENKQAESFSVEEKTQEIVNETDDDSRSSKDDPNSMRERLRKRKPLINNKQEKPSSEMSVSDEESNDARRELRRIDLSLNSKIKTPQGKSLRDFYGEDEAVYIMDAKNVGNLGRYLNHSCDPNVFVQNVFVDTHDLRLPWVAFFALRFIRAGQELTWNYSYDVGSIPGKMIVCKCGALNCRGRLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01213322;
- 90% Identity
- -
- 80% Identity
- -