Basic Information

Insect: Platygaster orseoliae
Gene Symbol: MBD-R2
Assembly: GCA_030522825.1
Location: JAPYZL010171802.1:5934-21673[-]

Transcription Factor Domain

TF Family: MBD
Domain: MBD domain
PFAM: PF01429
TF Group: Unclassified Structure
Description: The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 1.4e-16 9.9e-13 49.1 0.1 8 69 414 475 408 483 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	1.4e-16	9.9e-13	49.1	0.1	8	69	414	475	408	483	0.92

Sequence Information

Coding Sequence: atggCGCGGAAATGTTGCGTGTTGAGTTGCGAGGGTGATGTTCGTGAGTCGCGAGGCAAAGGCTTGCCTCTTCACAAATTCCCTAAAAATGCgGCACTTCGAGGCAGGTGGTTGGCCAGTGGTGGATTTCACTCCGAGTTCAAACCAAGTCCTGGACAACTCGTCTGTCACAGGCATTTCCTGAGAACCGACTACGATATAAACTTGTTAACTACCAACaacaagtttttattaaaaaagggAACCATCCCAACAATTTTTTCGGATTACGAAAATCATCCggaTCCTGTGAACATTTCCATGAAAACTCAGTACCTCCAACCGCAAAAAACTGTCGACACCCTGAATTCAGAAATTGCAAATGCGATGCAGCTAACGTTAGAAAATCAGGTTTTAGAAACCAACGAGAATAGGACGAATGAGGCTGAAGACGTAACGACTAACGAAAACGAGCATGTTGGTAACGAAACTTGTGAAAATGACAATCCGAGCGCTTCGAATTCTAGCAATATGAGTTTCATCCCTGGAACTAGATTGGAGGCCAAAGGATTCAGTGAAGAAtgGCATCCTGCAAGAGTGGTAGAAGCTGATTGGGTGGAACGCGAAGTTCTCATCCATTTCGATAAATGGAGTTCAAGATTCGATGAATGGATTCCAATGGACAGTCCTAGAATTTCCCAAATTCAATCAAATGGTAAAAGGAAAACATTCGACATCGGAGATCGAGTCATGGCTACTTGGGCCGACGGGAGAAAATATCCTGCAAAAGTCGACGCTGTTCTTGgccatgATCGTTACAATGTATTGTACGATGATGGATACGAAAAAATAgtcaaatcatcaaaaatgacgaaaattgcAGCCTGTAAAGTCGATCAaACTCCTGCTGAATTCGATAAAATCGAAGACGACATGAAAAGAAAAGATCCACCTGTAGATCTCATTGGTACGGATTCGAAGAAGGCGAAGATCGATATTGAAGAATCTGTATTAGATGAGATGGAGATCATGAAAATTGAAGGTGAACAAGAAATCGTGAGTTCGGAATTGCCAGGGTACAGCGTTCCGTTAATGGCTAATTCACCGCAAAAACCAAAGTCgacaaaagtgaaaaaagagAGTGGGAAAAGTGAGACTATTGATGATTTTTGCCCGGAGTGGGTCAACGGAGAGCCCCAAGGAACTGAGGCCTACATCCTTGAAGGATGTGACgGCCTTCGTCGTTCTATTATTGTACCTGATGGTCGATTGCCGCCAGGTTGGCAGAAACATTTTACTCAGAGACAAGCTGGTTCTTCCGCTGGAAAATGggatgttttttttatacatgaaTCGACGACGAAAAAGTTTCGTTCCCGCAATGACATAAAATTATACGTGGACAATTTGGGCCAGTATCCATTCGACCCCGAGCAATTTGACTTTTGCATTCACCGAACCAAAAGGTCAAACATGTACAGAAGCAAAATCGACTACGAGATGAGAAAAAGCAAGGCAACACCAGCCAagaccaaattttcaaatacttcagATCCAAATTTAGGAACCGGATCTAACGTTTCAACTTCGACGTCGTCAATTTTACCAGCTGACGACAATGCTGTTTTCATCGGAGGATTGAGAGTTGAAATGGAAGACAGTGCTTATAAATGCCCCAAAGAAGGCTGCagcaaaaatttccgaaaagaGAATCTTCTCCAAATGCACATTAAACATTACCATCCCGAGTACTCGAAATTTTTGGGCACCACTCCGAACGTTGCCGATTTGGCTTATGCCAGAACGATTCGCGACATATCGCCGAAGAAGAACATGAATTTCCTGGATCGATTGGGAAAGCCTGACAAGCGCAAGGACAAGCCCCAAATGCCGAATCAACTGCAATTGTCGACGACGTCTGCGGGTGTGGAAACGGAAGATTGCAAGGACGATTTGGCCGCGGTTTTGAGCTCGACAGTGGAAAACTGGAGGGGGTTGGATGGGGGGATTCCTCAAAATGATGTTTTCAATGTTAAGATCAAGGAGGAAAAAGGTCATACAGGTGTCAAGACGCTTTTGCCTGTGAGAACAGCGGATTCGGATTTGACGCCGAGCATGAAAAAACGACAACGTGGAGTCAATGACGTGGATGATTTCGAAGACTTCGATGATAGCACATTGGACACCGAAAAATCCTctttttcatacaatttcagCTATGGCAAATTCGACCCTCGAAGCGATGAATTTAGCGAAAATAgccAGTTGAACGATTTTCGCTGCGACAATAGTGATGCGTCCAAATTAGGAGATGTCAAAAAAGAAGAAACTGAAGAAGAAGGAGTAATGACCATGATCAATGGCAATTTGGTCAAATTAGAACGTCTACGACGTGAAGAAATCATCAATTGCACTTGTGGAATGATGGAAGAGGATGGACTTATGATACAATGCGACGTTTGCATGTGCTGGCAGCACGGTTATTGCTGCGGAGTCAACAGCGAAAAGGAAGTCCCCGAAAAATATATATGCTTTTTTTGCCAGCACTCGTATCGTCAGAGGCAGTCCAAAAAATATACCCACGACCAGGAATGGCTGAAAAGTGGAAAATTGCCAAGTGTATTAAATCGCCCCAAAGATGCAACGAAAGCCAACCAAAGGACAGCAATCCTCAAAAGGTCCATTGATTTGGTTGCTGCCTTGCTGCAAATTCAAGATGTCCTTTACAGTTTGCGAGTCAAGATCAACATTGCTCAACAAAAAGATCATCCAAAGTTATACCTTTGGGCAAAGGAATGGGACAAAGTGGTATTCTCGAAACTAGAAACCGAGCCAGTTCCTGTTTTGAAGTACGTTAAAAGCGAACGCAAGGACGTGAAACCAAGCAAAGAAGATGTCGGAAACGTTGATTCCGAATTGGATCGTCAAGTCAGGCAAGACATTGACGAAAACTCCATCGCTTCCGATCTGGAATTGATGAAGATTCTGCAAGACGACACGAATCCTGGGCTGGAGTCCAAAAACATTTGCGAGAATGTTGAAAACCAGAGTACTGGCAAAATCCTCATGGAAGCTTTACTGAAAACTGACCCGGAATCGACCGCAACACAAGAGAGTGTGCAATCCGCGAATCAGAAAGTCGAATCGGAAAATATAGAAATTGGAAACCAGCGTCCGATTCCACCTTGCATCCCGGAACCCGAAGCCCCAATAAATCTTGAAGAATGCAAGTGCAGACTTCTCCGGCATATCAGTCATTTCCAAACCCACATCGATGCGAAGTTGAACGCTATCGAAGTCCAAGTTGCGCATTTGGAGAAAATGAGCGTGGAAAACAATGAACCAAAAACAGATGATTCGCGGATGAAGGAAACGATAAATATGCTACTACGAGATTTATTAACGATCCGAAAAATAGCGTCAAACTGTTAA
Protein Sequence: MARKCCVLSCEGDVRESRGKGLPLHKFPKNAALRGRWLASGGFHSEFKPSPGQLVCHRHFLRTDYDINLLTTNNKFLLKKGTIPTIFSDYENHPDPVNISMKTQYLQPQKTVDTLNSEIANAMQLTLENQVLETNENRTNEAEDVTTNENEHVGNETCENDNPSASNSSNMSFIPGTRLEAKGFSEEWHPARVVEADWVEREVLIHFDKWSSRFDEWIPMDSPRISQIQSNGKRKTFDIGDRVMATWADGRKYPAKVDAVLGHDRYNVLYDDGYEKIVKSSKMTKIAACKVDQTPAEFDKIEDDMKRKDPPVDLIGTDSKKAKIDIEESVLDEMEIMKIEGEQEIVSSELPGYSVPLMANSPQKPKSTKVKKESGKSETIDDFCPEWVNGEPQGTEAYILEGCDGLRRSIIVPDGRLPPGWQKHFTQRQAGSSAGKWDVFFIHESTTKKFRSRNDIKLYVDNLGQYPFDPEQFDFCIHRTKRSNMYRSKIDYEMRKSKATPAKTKFSNTSDPNLGTGSNVSTSTSSILPADDNAVFIGGLRVEMEDSAYKCPKEGCSKNFRKENLLQMHIKHYHPEYSKFLGTTPNVADLAYARTIRDISPKKNMNFLDRLGKPDKRKDKPQMPNQLQLSTTSAGVETEDCKDDLAAVLSSTVENWRGLDGGIPQNDVFNVKIKEEKGHTGVKTLLPVRTADSDLTPSMKKRQRGVNDVDDFEDFDDSTLDTEKSSFSYNFSYGKFDPRSDEFSENSQLNDFRCDNSDASKLGDVKKEETEEEGVMTMINGNLVKLERLRREEIINCTCGMMEEDGLMIQCDVCMCWQHGYCCGVNSEKEVPEKYICFFCQHSYRQRQSKKYTHDQEWLKSGKLPSVLNRPKDATKANQRTAILKRSIDLVAALLQIQDVLYSLRVKINIAQQKDHPKLYLWAKEWDKVVFSKLETEPVPVLKYVKSERKDVKPSKEDVGNVDSELDRQVRQDIDENSIASDLELMKILQDDTNPGLESKNICENVENQSTGKILMEALLKTDPESTATQESVQSANQKVESENIEIGNQRPIPPCIPEPEAPINLEECKCRLLRHISHFQTHIDAKLNAIEVQVAHLEKMSVENNEPKTDDSRMKETINMLLRDLLTIRKIASNC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01214102;
90% Identity: iTF_01214102;
80% Identity: iTF_01214102;