Basic Information

Transcription Factor Domain

TF Family: GCFC
Domain: GCFC domain
PFAM: PF07842
TF Group: Unclassified Structure
Description: This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 1.3e-05 0.13 13.5 0.0 1 37 87 123 87 128 0.89

2 3 2.9e-10 2.7e-06 28.8 1.3 238 275 127 164 121 164 0.93

3 3 0.42 4e+03 -1.3 0.1 245 267 179 201 166 209 0.54

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	1.3e-05	0.13	13.5	0.0	1	37	87	123	87	128	0.89
2	3	2.9e-10	2.7e-06	28.8	1.3	238	275	127	164	121	164	0.93
3	3	0.42	4e+03	-1.3	0.1	245	267	179	201	166	209	0.54

Coding Sequence: ATGGATAAACGAATTGACAGTTGGGAGGTCCACATGAAAGGAATCGGATCCAAACTACTCCTTCAAATGGGGTTCCAAGCCGGAAAAGGCTTAGGCAAAAATCTCCAAGAGCTCACGTGCACCGAGGTCGGGGCGCCATTGGAGCCTATGGCCCTGAGAAACTCCCCGAAAAAGTCCTTAGTTGTGAACACGCCATCAGCAACTCCCAGCAGCCACGTTTTCAAAGTCGTAGAGACGATGGTGGAGAGTAATGCAGGACTGAACGAGATGGCGACTGAGTTTCGGAAACTCAGGGATAACTATTCGCAAGAGTACATGGAATTCGAGCTGGGCAAACTGGCGAGTAGTATGGCAGGGGATAAGATGAAGGAGATCTGTGAACAAAACATGGATAGCTGGGACTGTGTTTTCGAATGGGGAAACCTCATAAAGGCCCACCACATGGCCGACTTGTCGAAGGagcactttttcaacaagtggatGTTTGTGCTTCTCCATTGGCTCAACCACTCGCCGAATTTCGACGAGGTCACCAGCTGGTTCTCTGGGTGGAAGTCAGCACTAGATGCGAAACTGCTGGCTGAGCCAGTAGTCGCAGATTATTTAAAGAAAACTTCTGCAGTCTCGAATGCGGATGGAACAGTGCGACACTCAAAATGGCAAACCAACGAAAAAAAACTGTGA
Protein Sequence: MDKRIDSWEVHMKGIGSKLLLQMGFQAGKGLGKNLQELTCTEVGAPLEPMALRNSPKKSLVVNTPSATPSSHVFKVVETMVESNAGLNEMATEFRKLRDNYSQEYMEFELGKLASSMAGDKMKEICEQNMDSWDCVFEWGNLIKAHHMADLSKEHFFNKWMFVLLHWLNHSPNFDEVTSWFSGWKSALDAKLLAEPVVADYLKKTSAVSNADGTVRHSKWQTNEKKL

Sequence clustering based on sequence similarity using MMseqs2