Basic Information

Insect: Platycnemis pennipes
Gene Symbol: -
Assembly: GCA_933228905.1
Location: CAKOGJ010004469.1:68651-70507[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.61 4.3e+02 4.6 0.3 1 23 28 50 28 50 0.94

2 18 9.7e-07 0.00069 22.8 1.2 1 23 95 118 95 118 0.97

3 18 0.038 27 8.4 0.5 2 23 155 177 154 177 0.92

4 18 0.0024 1.7 12.2 0.5 3 23 185 206 183 206 0.90

5 18 1.2e-05 0.0086 19.4 3.5 1 23 212 234 212 234 0.99

6 18 0.0028 2 12.0 0.3 1 23 240 262 240 262 0.97

7 18 7e-06 0.005 20.1 2.7 1 23 267 289 267 289 0.98

8 18 4.4e-06 0.0031 20.8 0.6 1 23 295 317 295 317 0.97

9 18 2.4e-08 1.7e-05 27.9 0.8 1 23 323 345 323 345 0.99

10 18 1.1e-07 8e-05 25.8 1.6 1 23 351 373 351 373 0.99

11 18 4e-06 0.0029 20.9 1.7 1 23 379 401 379 401 0.99

12 18 1.4e-05 0.0098 19.2 0.7 1 23 407 429 407 429 0.98

13 18 3.4e-06 0.0024 21.1 7.5 1 23 435 457 435 457 0.99

14 18 4.2e-05 0.03 17.7 1.7 1 23 463 485 463 485 0.99

15 18 7.4e-08 5.3e-05 26.4 5.6 1 23 491 513 491 513 0.99

16 18 2.2e-06 0.0015 21.7 5.5 1 23 519 541 519 541 0.98

17 18 3.2e-07 0.00023 24.4 1.8 1 23 547 569 547 569 0.98

18 18 0.0019 1.4 12.5 2.1 2 23 575 596 574 596 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.61	4.3e+02	4.6	0.3	1	23	28	50	28	50	0.94
2	18	9.7e-07	0.00069	22.8	1.2	1	23	95	118	95	118	0.97
3	18	0.038	27	8.4	0.5	2	23	155	177	154	177	0.92
4	18	0.0024	1.7	12.2	0.5	3	23	185	206	183	206	0.90
5	18	1.2e-05	0.0086	19.4	3.5	1	23	212	234	212	234	0.99
6	18	0.0028	2	12.0	0.3	1	23	240	262	240	262	0.97
7	18	7e-06	0.005	20.1	2.7	1	23	267	289	267	289	0.98
8	18	4.4e-06	0.0031	20.8	0.6	1	23	295	317	295	317	0.97
9	18	2.4e-08	1.7e-05	27.9	0.8	1	23	323	345	323	345	0.99
10	18	1.1e-07	8e-05	25.8	1.6	1	23	351	373	351	373	0.99
11	18	4e-06	0.0029	20.9	1.7	1	23	379	401	379	401	0.99
12	18	1.4e-05	0.0098	19.2	0.7	1	23	407	429	407	429	0.98
13	18	3.4e-06	0.0024	21.1	7.5	1	23	435	457	435	457	0.99
14	18	4.2e-05	0.03	17.7	1.7	1	23	463	485	463	485	0.99
15	18	7.4e-08	5.3e-05	26.4	5.6	1	23	491	513	491	513	0.99
16	18	2.2e-06	0.0015	21.7	5.5	1	23	519	541	519	541	0.98
17	18	3.2e-07	0.00023	24.4	1.8	1	23	547	569	547	569	0.98
18	18	0.0019	1.4	12.5	2.1	2	23	575	596	574	596	0.97

Sequence Information

Coding Sequence: ATGAGAGGATCGGTTCGAGGCAGGAGTAGCGGTCGGGGTGGTAGTCGTTCGTGTTTAGGTCGGCGAAAAGTGAGGGAGAAATTCATTTGTGTTGAATGTGGAGCTTCGTCTGTCTGCAAGCTTACTCTGTCGACCCACATAAGGGCTCACCTGAGAAGGAAGGAGGACACGTGTGCCGCTAAGGGAGGAGGACAGGGTCAGGAGAATGAACATGGAACCAACATTTCCCTTCCCAATTATGAAGAGGTGTTTGGCACGTGTAGAGACTTGGACCGTGAGGGGTTCATCTGTGATCATTGCGGTAAGGATTACTCTCGGAAGACCGAACTGATAAGCCACTTACGTTCCGTCCACCTTAAGGTGTGTGTCGTGGAAAGCACGGCCCCCAAGAAGATATTCAGCAGCCAAAAGAGCTCCCGTGTGTTCACCCAAAAACCTAAGAAGAGGGAGAAGACGTTGTGGGTTTGTGATTGCTGTGGCAAGGGTTTCCTCAAAAAGGCCCAGCTCGTGAGACACATCACCTCGGTCCACCTCGGACGGAAGCCTTTATTTTGCGACATTTGTTCCAAGAGCTTCTCAGGAAATCTCTGCCTAAAGGCCCACGTAATTGCGGTACATATTGGAGAGAGGCGTTTCAAATGTGAGAAATGCATTAAGGCTTTCAAGACAAACAATCACCTGAAGGTTCACATGCTGACGCACTTGGAGAAGCGCCCTTTCCCCTGCACCCTCTGCCCGAGATCATTCCTGCTCGAGTACCTACTCAAGTCCCACATGGAGTCACACAGCAGACCAAAGCACACATGTGAGATATGTGGGAAGGATTTCGAAAGCAAACGTCTACTTCAGACGCACAGACAGAGGCACTCAGAGGAGAGATTGTTCAAATGTGAGCAGTGTCCGAAAGCTTACAAGACAAAAAGTGATCTCAATctgcattcacttgttcattcgcgcctgcgcaagtattcttgtggagtgtgcgggaagaagttcacccagagtgggagcctgagcagtcacatgaggacccacgacggaaagaggccttttgagtgtgaggtgtgcagcaaaaagttcgctcggaagaataccttgaaggtgcacatgaggacccatgacggcaagaagccgtttgagtgtgagctgtgccacaagaagttcgctttgaaaggtaacttaagcggtcatatgaggacccatgacggacagaagccgtttgagtgtgagctgtgtcacaagaagttctcccagggtggggctctgggaactcacatgagggtccatgacggaaagaggccgtttgaatgtaagctgtgccacaagaaattctcccggagttcccatgtgagcacacacatgaggacccatgacggaaagagaccgtttgagtgtgaacagtgccacaagaagttcgcttggaaaggtaacttaagcggtcatatgaggacccatgacggaaggaagccgtttgagtgtgaggtttgccacaagaagttctcccagagtgggcacctaaagaatcacatgaggacacatgatggaaagagaccatttgagtgtgaagtatgccatcacaagttctcctttagtagcaacctgaggacgcacatgaggatccatgacggaataaggccgtttgagtgtgaggtttgccacaagaagttctcccagagtgggaacctaaaggatcacATTGAACGGCATAAAGAGAGAAGTCTCGAATGTAAGCTATGCCACAAACTGTTCAAAACGATATTGGATCTGAGGGTTCACGTGAAGAGGCACAGTTCCAAAAAAATGGCGTCCACAAGTGTGAGGAGTGCTGTAAGACGTTCCAATCTAAGGACGCACTGA
Protein Sequence: MRGSVRGRSSGRGGSRSCLGRRKVREKFICVECGASSVCKLTLSTHIRAHLRRKEDTCAAKGGGQGQENEHGTNISLPNYEEVFGTCRDLDREGFICDHCGKDYSRKTELISHLRSVHLKVCVVESTAPKKIFSSQKSSRVFTQKPKKREKTLWVCDCCGKGFLKKAQLVRHITSVHLGRKPLFCDICSKSFSGNLCLKAHVIAVHIGERRFKCEKCIKAFKTNNHLKVHMLTHLEKRPFPCTLCPRSFLLEYLLKSHMESHSRPKHTCEICGKDFESKRLLQTHRQRHSEERLFKCEQCPKAYKTKSDLNLHSLVHSRLRKYSCGVCGKKFTQSGSLSSHMRTHDGKRPFECEVCSKKFARKNTLKVHMRTHDGKKPFECELCHKKFALKGNLSGHMRTHDGQKPFECELCHKKFSQGGALGTHMRVHDGKRPFECKLCHKKFSRSSHVSTHMRTHDGKRPFECEQCHKKFAWKGNLSGHMRTHDGRKPFECEVCHKKFSQSGHLKNHMRTHDGKRPFECEVCHHKFSFSSNLRTHMRIHDGIRPFECEVCHKKFSQSGNLKDHIERHKERSLECKLCHKLFKTILDLRVHVKRHSSKKMASTSVRSAVRRSNLRTH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01212783;
90% Identity: iTF_01212783;
80% Identity: iTF_01212783;