Pign026828.1
Basic Information
- Insect
- Platerodrilus igneus
- Gene Symbol
- -
- Assembly
- GCA_036346225.1
- Location
- JARFIW010000319.1:2180725-2183683[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.9e-09 2.4e-06 30.5 0.0 5 39 1 36 1 42 0.89
Sequence Information
- Coding Sequence
- ATGCGTCAGGCTGTTGAGGAGGTACTGGAGGGAAGAATGGGGTATCTCAAAGCTTCTAAAGAATATGGGGTTCCTCGTACAACCATTAAAGCAAGGCAAAAAAAAGGACTAGGACGTCATAAACCTGTTTTTAGTCCTGCTCAGGAAGAGGAATTAGtggaatatattttgtgtatgGAATCACGCCTGTTTGGTTTAACTCTCAATGCATTAAGGTGTTTGGCATTTGAATTAGCAGAACGCAACGGCTTGCCTAATAGATTTAATAAGAGCAAGAAAAAGGCTGGTAAAGCATGGCTGTATGCTTTTCTCAATCGGCATCCGACTATTAAACTTCGATCTCCTGAGCCAACCTCACTAGCTAGGGCGATAGGTTTCAATAGGCCTTCCGTAAACAAATTTTTCTCGCTGATTACTGAAACGATGGAGAAACACAAAATACCCCATGGGCGTATTTATAACGTCGATGAAACAGGGATTATGACAGTACCAAAAAAACGGTCTAAATGTTTATCATTGTGTGGAAAGCGACAAGTTGGCTGCTTGTCTTCGGCTGAACGTGGAGTTCTGGTTACAGTGGAGATCTGCATGAGTGCTAGTGATGCATTCATGCCACCGTTGTTCGTTTTCCCAAGAGCTAGGGCAAAGCCAGAACTGTTAGATGATGCTCCCCCTGGTAGTACAGCTCATTACCATCCTTCTGGGTGGatgcaaacggaaatatttttgagttggtttgataaatttattgctttTTCCAACCCTTTTAAAGAAAATCCAGTTCTTTTGCTTCTAGATGGCCATGCCACCCATACCAAGAATATAGAGCTAATTCATAGAGCTACGGATAACGGTGTTGTGTTACTGTGCTTTCCACCGCATACAACACACCGTCTACAACCAATAGACGTAAGTTTTATGCCACCAATCAGCTCATATTACAGTTCAGAGGTCCAGAGATGGATGCAACAACATCCAGGCAGGCCTATTACTATTTCTCAAATAAGCATACTTTTTGGAAATGCTTTTATGAAAGCCGCTAGCGTCCAAACCGCAGTTAGCGGATTTAGAAAAACGGGGATACATCCAGTAACTCCAGAGATCTTCCCAGACTGGATGTTTGAACCGGCCGAGACTACAAATAGGCCCACTCAAGGTGAAATAAATGATAACCAGTTACCAGAACCTAGAAACTCTCCACCTAGAACACCATTGAGAACACCACCGAGGACACCACCTATGACACCACCAAGAAGTTTACCGAGATCACCACTGAGAAAACCACCAAGCACAACACCGATTCCTACAGAGCAGTTTTATGCAAATTCGACTCCTTCATGTTCCCATACCACGCAGAATTTTGTTATAACGCCACAACAGGTTGTTCCAGTTCCTCattgtgaacgaaaattaaatctaaatgatAGAAGAAGGGGTAAAACTGCAGTGTTAACATCGACACCATATAAAGAGGAACTAGAAGAATCAATTTCTAAAAGACTTTCTACAAAGAAGCCAAAATTAAACTTAGGAGATACTGAAAAAACAGCCCACATagccaaactaaataaaaaaggcAAAATAAATGACAATGGGATGACGACTAGAaaagacgtaacagtaaataacgCAAATAAGAAAGACAGCAGCAGTGCAAAAGAAACAAGCGTGAGAGACAAAAAACAAAATGATACCAAgggtcaaaaaaatataaaaagaaggaAGTTGAGAGAAAGTGATGATTCAAGTTCAGAAGATGAATGCGAAGAAGCAGTTTGTATATTTTGCAGCGAATTTTATTCCAATTCTAAGGCAGAAGAAGGAATAAGGGATCACGTTGGATACAGTAGCACCTTAGTTGAGAAATCGCAAGCTATATGGAAGGAAGTTCCTCCGACTGTAACACCTTATGTGTGGACACGCACAATCTGCCATACAGAAAAAGAGATACTATTCTGGTGGAATAAGGCAATAGCATTTAATTATGACGATGCACTACCGTTGATTATCATTGTAGATAGTGAAGAGTACGATGACTTTTTGTGGAATGAAGaaacataa
- Protein Sequence
- MRQAVEEVLEGRMGYLKASKEYGVPRTTIKARQKKGLGRHKPVFSPAQEEELVEYILCMESRLFGLTLNALRCLAFELAERNGLPNRFNKSKKKAGKAWLYAFLNRHPTIKLRSPEPTSLARAIGFNRPSVNKFFSLITETMEKHKIPHGRIYNVDETGIMTVPKKRSKCLSLCGKRQVGCLSSAERGVLVTVEICMSASDAFMPPLFVFPRARAKPELLDDAPPGSTAHYHPSGWMQTEIFLSWFDKFIAFSNPFKENPVLLLLDGHATHTKNIELIHRATDNGVVLLCFPPHTTHRLQPIDVSFMPPISSYYSSEVQRWMQQHPGRPITISQISILFGNAFMKAASVQTAVSGFRKTGIHPVTPEIFPDWMFEPAETTNRPTQGEINDNQLPEPRNSPPRTPLRTPPRTPPMTPPRSLPRSPLRKPPSTTPIPTEQFYANSTPSCSHTTQNFVITPQQVVPVPHCERKLNLNDRRRGKTAVLTSTPYKEELEESISKRLSTKKPKLNLGDTEKTAHIAKLNKKGKINDNGMTTRKDVTVNNANKKDSSSAKETSVRDKKQNDTKGQKNIKRRKLRESDDSSSEDECEEAVCIFCSEFYSNSKAEEGIRDHVGYSSTLVEKSQAIWKEVPPTVTPYVWTRTICHTEKEILFWWNKAIAFNYDDALPLIIIVDSEEYDDFLWNEET
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01210226;
- 90% Identity
- iTF_01210342; iTF_01210197; iTF_01210285; iTF_01210173; iTF_01210251; iTF_01210235; iTF_01210206; iTF_01210210; iTF_01210183; iTF_01210192; iTF_01210195; iTF_01210327; iTF_01210395; iTF_01210339; iTF_01210245; iTF_01210215; iTF_01210375; iTF_01210347;
- 80% Identity
- -