Pign163976.2
Basic Information
- Insect
- Platerodrilus igneus
- Gene Symbol
- -
- Assembly
- GCA_036346225.1
- Location
- JARFIW010001545.1:516786-517430[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.7e-11 1.1e-08 38.0 0.0 2 39 15 53 14 59 0.89
Sequence Information
- Coding Sequence
- ATGGGAAAGTATACAAGAACAACGCAAAGGCAGTCTTGGGATGAGAACAGTATGCGTCAGGCTGTTGAGGAGGTACTGGAGGGAAGAATGGGGTATCTCAAAGCTTCTAAAGAATATGGGGTTCCTCGTACAACCATTGAAGCAAGGGTGAAGAAAATTAAACAGGGTGTTCTTAATAGAGAGGATTCGGCAAAAAAAGGACTAGGACGTCATAAACCTGTTTTTAGTCCTGCTCAGGAAGAGGAATTAGtggaatatattttgtgtatgGAATCACGCCTGTTTGGTTTAACTCTCAATGCATTAAGGTGTTTGGCATTTGAATTAGCAGAACACAACGGCTTGCCTAATAGATTTAATAAGAGCAAGAAAAAGGCTGGTAAAGCATGGCTGTATGCTTTTCTCAATCGGCATCCGACTATTAAACTTCGATCTCCTGAGCCAACCTCACTAGCTAGGGCAATAGGTTTCAATAGGCCTTCCGTAAACAAATATTTCTCGCTGATTACTGAAAGGATGGAGAAACACAAAATACCCCCTGAGCGTATTTATAACGTCGATGAAACAGGGATTATGACAGTACCAAAAAAACGGTCTAAATGTTTATCATTGTGTGGAAAGCGACAAGTTGGCTGCTTGTCTTGA
- Protein Sequence
- MGKYTRTTQRQSWDENSMRQAVEEVLEGRMGYLKASKEYGVPRTTIEARVKKIKQGVLNREDSAKKGLGRHKPVFSPAQEEELVEYILCMESRLFGLTLNALRCLAFELAEHNGLPNRFNKSKKKAGKAWLYAFLNRHPTIKLRSPEPTSLARAIGFNRPSVNKYFSLITERMEKHKIPPERIYNVDETGIMTVPKKRSKCLSLCGKRQVGCLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01210227;
- 90% Identity
- iTF_01210306; iTF_01210158; iTF_01210167; iTF_00002053; iTF_01210227; iTF_01210353; iTF_01210137;
- 80% Identity
- -