Ppul047369.1
Basic Information
- Insect
- Plagodis pulveraria
- Gene Symbol
- -
- Assembly
- GCA_963890685.1
- Location
- OY982974.1:16890715-16893404[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00022 0.037 16.1 3.9 1 23 162 185 162 185 0.97 2 17 0.00027 0.045 15.8 2.2 1 23 194 217 194 217 0.96 3 17 0.095 16 7.8 0.3 3 23 231 252 230 252 0.96 4 17 0.006 1 11.6 4.0 1 23 261 284 261 284 0.96 5 17 5.7e-06 0.00094 21.1 1.9 1 23 296 319 296 319 0.97 6 17 0.00025 0.041 16.0 0.6 2 23 351 373 350 373 0.96 7 17 0.0012 0.19 13.8 1.5 2 23 383 405 382 405 0.96 8 17 0.02 3.3 10.0 1.1 2 20 412 430 411 432 0.91 9 17 0.00048 0.08 15.0 0.8 2 21 437 456 436 459 0.94 10 17 0.13 22 7.4 0.4 3 23 469 490 468 490 0.91 11 17 4.8e-06 0.0008 21.4 4.6 1 23 495 518 495 518 0.94 12 17 0.00049 0.081 15.0 2.4 1 23 529 552 529 552 0.98 13 17 0.0029 0.48 12.6 0.3 1 23 572 595 572 595 0.92 14 17 0.17 28 7.1 2.6 2 23 628 649 627 649 0.96 15 17 7.9 1.3e+03 1.8 2.2 3 23 657 679 655 679 0.88 16 17 0.0087 1.4 11.1 0.2 1 23 715 737 715 737 0.97 17 17 0.082 14 8.0 1.9 1 23 743 766 743 766 0.97
Sequence Information
- Coding Sequence
- ATGTCACTATTACCCGACACCATGAAAAAGAAAGATAAAAGTGAACGAAAAGACCCCACCAGTTTCCTCCCTGAAGAAGAGATGTCATATGAAattaagaagaagaaaaaaaagaaaaagaagaaacaaGAAGACCCCTTTAAAGATATTGAACAGAAGTTAGCAGTGGCCAGAGAACCTGATATTACTGCCTTGGACCCTGATATAGGATCAACCCCAGTAGTAGACCCTGAAGTTACTATTAAAGTTGAACATATTGAAGTGGACTTGGATTTTAATGATtttcttccaaatgatgatgatgacaccCATCACAGTGATTACATCCCTCCAGAACCTATAGTCAAGCTTGAAGAACAGACCAGAGATGCTGTGATTCTAACATTTCAAAGTGTCACCAATGAACACAAAGAAGAATGTGATAAAAACCTTGAAGATATCAAACCAAAGACAGAAGAGCTTGAACCTGATTCAAGCAACAATTACTTCTGTAAAGTGTGCCATTTAGTCTTCAAAAACCCTAGAACATTACTATCACATcagaaaagaaaacataaacGCTTCAGGAGGTACTTTCAACACATTTGTGATCACTGCGGGATGTCATATGATGCTAAGAACAGTTTACTTGCTCATATGAGAAGGAAGCATGGTCCAAATGCGGACAAAGATGATAAGGTAGAACAAGCATGTGAAATTTGTGCTCTAGTCTTCAAAGGAACGAACAGACTCCGCATGCATATGCTTAGAAAGCATGGATCAAAGGATGATTCATTCAAACATGCATGTGAAGACTGTGGATTGACGTATGATAAGTACTGCAgtttgactgtacacaggcggCGAAAACATAGCAATGTTCCTAAACCTAAACCAACACAATGGTTCACTTGTCCATATTGCTCAAAAATGTTTGCAAGAAGAGAAACATACTCACGTCATATTCAACGGAATCATCAAGTGAATGACGATGATAATGTAAAGGATGAGAAAAAGGAATCAGATGAGCTTTTAAAGAATAGTATTACTAATGAAAAATCTGGAGAAGTAACATGCAGTAGCTGTCCATTGGTGTTTTCTTCCTTGATGTATTTAAAATTGCATATGCGAAGAAAGCACAATGCTCTGACCGAAGACTTTAGATTGAAATGTAAGCTTTGTAATCTATCATATGATAAAGTGGAAAGTTTAAAACGTCATGTGAGGAGGAAACATGACATGGGTACATTGTCATATTGTGATGTATGTAGTAAGCAGTTTTCTTCAAGGGAAGCTTATTTGAAGCATTCACATACTAAAACTATAAAGGAATGCAATATGTGTGGACAAATCTTTGCCACACAAACTGGATTGGCTAAGCATTTAAGGTGTGTACATAAAGTTGTAGCAGATAAGACTGTTTTTTGTGGTGTTTGTAATGAAGGTTTCTATGATAAACGTCAGTTAAAGCCACATTTTTTAAGAGTACATCTTCAAGTCAgttatacttgtaaatattgCGGTAAACGATTCAAATCAAAAGAGAGTTATAGGCGTCACCTGTTATTTAAACATCCCGATTGTCAAGTTGAAGAGGAGAAATCACACAAATGTGAGAAATGCCCAGAGCTGtttataaatgaatttgaattgtgTAAGCACATAAACACAGCGCATACAGATAAACCTGAAGTTGTTGTAAAGAAAGAGGAGAATGATGTTATAAAAGATTCATATCAGTGTACAAAATGTCCCAATATATATGCCACATGGGAAGATTTGAGGTTACATTTTGAACAGAATCATTACGTAAGTGAAGAGACACAATGTCAAATATGCGGAGAACTAATGCCTAACATCGAGCTTCTAAAGCATATGAAAGATCATGAAGATACGGACTTAACGTGTCGATACTGTGAGTTCAAAACGAAGAACCGTGTCAGTATGACTCAGCATACCCTAAGACACACTAATGCTGCAACAATACACTGTGACTTCAATGGATGTAGGTATAAAACATTCTATGAAGATGCCATGATTAAACATAAGCGAAAACATGTAGACTTAGGAGTGAAGTTGCAATGTGCCAGTTGTCCTTTCCAGACGATGAAcaaatatatactaaaatatCATGAAGAAGCTCATTCGTCTGGTAAAAAGAGATATTCGTGTAATCAGTGTGATTATGCCACAGTACTTCCAGCAAATTTGGTCCAGCACAAGTACAAACACGCAACAGAAAAGAGGTTTAAATGTGAAGTATGTCCGTTTGCCACAAAGTACAATACGTCGTTACGTTTTCATGTTAGAAAGAAACACTGTGATTTACCCACTTTAAGGTAG
- Protein Sequence
- MSLLPDTMKKKDKSERKDPTSFLPEEEMSYEIKKKKKKKKKKQEDPFKDIEQKLAVAREPDITALDPDIGSTPVVDPEVTIKVEHIEVDLDFNDFLPNDDDDTHHSDYIPPEPIVKLEEQTRDAVILTFQSVTNEHKEECDKNLEDIKPKTEELEPDSSNNYFCKVCHLVFKNPRTLLSHQKRKHKRFRRYFQHICDHCGMSYDAKNSLLAHMRRKHGPNADKDDKVEQACEICALVFKGTNRLRMHMLRKHGSKDDSFKHACEDCGLTYDKYCSLTVHRRRKHSNVPKPKPTQWFTCPYCSKMFARRETYSRHIQRNHQVNDDDNVKDEKKESDELLKNSITNEKSGEVTCSSCPLVFSSLMYLKLHMRRKHNALTEDFRLKCKLCNLSYDKVESLKRHVRRKHDMGTLSYCDVCSKQFSSREAYLKHSHTKTIKECNMCGQIFATQTGLAKHLRCVHKVVADKTVFCGVCNEGFYDKRQLKPHFLRVHLQVSYTCKYCGKRFKSKESYRRHLLFKHPDCQVEEEKSHKCEKCPELFINEFELCKHINTAHTDKPEVVVKKEENDVIKDSYQCTKCPNIYATWEDLRLHFEQNHYVSEETQCQICGELMPNIELLKHMKDHEDTDLTCRYCEFKTKNRVSMTQHTLRHTNAATIHCDFNGCRYKTFYEDAMIKHKRKHVDLGVKLQCASCPFQTMNKYILKYHEEAHSSGKKRYSCNQCDYATVLPANLVQHKYKHATEKRFKCEVCPFATKYNTSLRFHVRKKHCDLPTLR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01208556; iTF_00125333;
- 90% Identity
- iTF_01208556;
- 80% Identity
- -