Asyr022433.1
Basic Information
- Insect
- Apeira syringaria
- Gene Symbol
- -
- Assembly
- GCA_934045895.1
- Location
- CAKOGY010000413.1:123722-126930[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00019 0.015 16.1 3.9 1 23 162 185 162 185 0.97 2 17 0.00012 0.0096 16.8 1.9 1 23 194 217 194 217 0.97 3 17 0.0041 0.34 11.9 0.4 3 23 231 252 230 252 0.97 4 17 0.0053 0.44 11.5 3.2 1 23 261 284 261 284 0.96 5 17 2.4e-06 0.0002 22.1 1.5 1 23 296 319 296 319 0.97 6 17 0.00021 0.017 16.0 0.6 2 23 350 372 349 372 0.96 7 17 0.00098 0.081 13.8 1.5 2 23 382 404 381 404 0.96 8 17 0.065 5.4 8.1 1.0 2 20 411 429 410 431 0.90 9 17 0.00044 0.037 14.9 0.6 2 21 436 455 435 458 0.94 10 17 0.017 1.4 10.0 0.6 3 23 468 489 467 489 0.93 11 17 0.0048 0.4 11.7 4.2 1 23 494 517 494 517 0.95 12 17 1.5e-05 0.0012 19.6 1.8 1 23 528 551 528 551 0.98 13 17 4.6e-05 0.0038 18.0 1.2 1 23 570 593 570 593 0.95 14 17 0.028 2.3 9.3 2.4 2 23 626 647 625 647 0.97 15 17 5.1 4.2e+02 2.2 1.4 2 23 654 677 653 677 0.90 16 17 0.0093 0.78 10.8 0.3 1 23 713 735 713 735 0.97 17 17 0.069 5.7 8.0 1.9 1 23 741 764 741 764 0.97
Sequence Information
- Coding Sequence
- ATGTCCCTCGTAACCAAACCCATAGTAAAAACAGATAGAGATGGACGAAAAGACCCTACCTCGTTCCTCCCTGAAGAAGAGATGTCCTATGAGATCAAAGAGAAAAAGAAGAAGAAAAAGAAAAAAAAGAAACAGATAGATCCATTCAAAGATATAGAGGAGAAATTAGCTGTGGTTAGAGAACCAGATATAACCGCTTTAGATCCGGACATTGGAAGGACAATGGTTGATACAGCTGAGGTGACAATTAAAGTGGAGAGCATTGAGGTTGACTTAGATTTTAATGATTTTATTCCGAATGATGACTATGATCAAGATGATGACATGCCCCCTGAACCCATAGTCAAACTAGAAGAACAGAATCGTGACGCTGTTATCCTCACCTTTCAAAATGTCATAAGCGACAAAATAAAAAGTGAGAATAATGCTGTAGAAGATATCAAACCGAAGACAGAAGAAGCTGAAATTGATTCAGCAAAGAACTACTTCTGCAAAGTGTGCCATTTAGTCTTTAAAAACCCGAGAACTTTGCTCTCGCATCAAAAGAGGAAGCATAAACGATTTAGAAGGTATTTTGAACATGTTTGCGATCACTGTGGAATGTCGTATGATGCTAAAAATAGTTTAGTTGCTCATATGAGACGGAAACATGGTCCTGATGCAGACAAGGATGACAAAGTGGAAAGAGCTTGTGATATTTGTGCACTAGTCTTTAAAGGAAGTAATAGGCTTCGCATGCATATGAGAAGAAAGCATGAAATGCATGATGAATCATTCAAACATGCATGTGAAGACTGTGGCTTAACATATGATAAATATTGCAGTTTAATTGTTCATAGACGTAGGAAACATAGCAACATGCCCAAACCAAAAACCACTCAATGGTTTACATGTCCGTATTGCTCAAAAGTGTTTGCACGGAGGGAGACTTATTCTCGTCACATCCAAAGGAATCATCAAGTCAATGATGATGATGTTAAGAATGAAAATACAGAGTCGGAAAAGCTGTTAAAGAATAGTATAACTAATGAGAAGTCAGGTGAAGTTACATGCAGTAGTTGTCCTTTAGTCTTTTCATCGTTGATGTACTTAAAGTTGCATATGCGAAGAAAGCATAATGCTCTGACAGATGACTTTAGATTGAAATGTAAGCTTTGTAACCTTTCTTATGATAAAGTTGAAAGTTTGAAACGTCATGTGAGAAGAAAACATGATACGGGTACATTGTCATATTGTGAAGCATGTAATAAGCAGTTTTCTTCTCGGGAAGCTTATTTGAAACATTCACACACAAAAACTGTTAAAGAATGTAACACGTGTGGACAAATATTTGCCACGCAAGGGGGTTTGGCCAAGCATTTAAGATGTATTCACAAGATAGTAGCAGATAAGACTGTTTTTTGTAACATTTGCAACGAAGGTTTTTATGATAAACGTCAGCTCAAACCACATTTTATGAGGGTACATCTCCAAGTCAGCTATACATGTAAATTTTGCAGTAAATTATTTAAAGCTAAAGAGAGTTATAGACGTCACATGTTATTTAAACACCCAGACAGTCATGTGGAAGAAGAAAAATCTCATCAATGTGAAAAATGTCCAGAAGTGTTTATAAATGAATTTGAACTCTGTAGACATATTAACACAGTACATAGATTACAAGAAGTTGTAATTAAAAAAGAAGAGAAAGATATTATAAAAGATTTATATAAGTGTACAAAATGTTCTGAAGTATATTCCACATGGGAAGAGTTGAGACAACATTTTGAGAAAAATCATTATTCGAGCGAGGATGTACAGTGTCAGAAGTGTGGTGAACTAATGCCGAGAATCGATCTGTTGCAACATATGAAAGAGCATGAAGAAACTGAAATGACATGCCGATACTGTGAGTTTAAAACAAAGAGCAGGGTAAGCATGACACAGCATATGTTAAGGCACACTAATGCTGCAACAATACGATGTGATTTCAATGGTTGTAGATATAAAACTTTTTATGAAAATGCAATGATAAAGCATAAGAGAAAGCATGTAGATTTAGGTGTGAAACTGCAATGTGCTAGCTGTCCATTTCAAACAATGAACAAATACATACTAAAATATCACGAAGAAGCACATTCGTCTGGTAAAAAGAAATATTCTTGCACTCAATGCGATTATGCTACTGTCCTACCGGCAAATTTAGTACAACATAAGTACAAGCATGCCACAGAGAAAAGGTTTAAATGTGAAGTATGTCCATTTGCAACGAAGTATAACACTTCTTTGCGTTTCCATGTAAGGAAAAAACACTGTGATCTGCCCACTTTAAGTAAGGAATGTTAG
- Protein Sequence
- MSLVTKPIVKTDRDGRKDPTSFLPEEEMSYEIKEKKKKKKKKKKQIDPFKDIEEKLAVVREPDITALDPDIGRTMVDTAEVTIKVESIEVDLDFNDFIPNDDYDQDDDMPPEPIVKLEEQNRDAVILTFQNVISDKIKSENNAVEDIKPKTEEAEIDSAKNYFCKVCHLVFKNPRTLLSHQKRKHKRFRRYFEHVCDHCGMSYDAKNSLVAHMRRKHGPDADKDDKVERACDICALVFKGSNRLRMHMRRKHEMHDESFKHACEDCGLTYDKYCSLIVHRRRKHSNMPKPKTTQWFTCPYCSKVFARRETYSRHIQRNHQVNDDDVKNENTESEKLLKNSITNEKSGEVTCSSCPLVFSSLMYLKLHMRRKHNALTDDFRLKCKLCNLSYDKVESLKRHVRRKHDTGTLSYCEACNKQFSSREAYLKHSHTKTVKECNTCGQIFATQGGLAKHLRCIHKIVADKTVFCNICNEGFYDKRQLKPHFMRVHLQVSYTCKFCSKLFKAKESYRRHMLFKHPDSHVEEEKSHQCEKCPEVFINEFELCRHINTVHRLQEVVIKKEEKDIIKDLYKCTKCSEVYSTWEELRQHFEKNHYSSEDVQCQKCGELMPRIDLLQHMKEHEETEMTCRYCEFKTKSRVSMTQHMLRHTNAATIRCDFNGCRYKTFYENAMIKHKRKHVDLGVKLQCASCPFQTMNKYILKYHEEAHSSGKKKYSCTQCDYATVLPANLVQHKYKHATEKRFKCEVCPFATKYNTSLRFHVRKKHCDLPTLSKEC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01209593;
- 90% Identity
- -
- 80% Identity
- -