Ppul017750.1
Basic Information
- Insect
- Plagodis pulveraria
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_963890685.1
- Location
- OY982957.1:3826703-3841396[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.1e-22 4e-18 67.4 0.5 137 297 10 162 8 164 0.86 2 2 0.19 3.6e+03 -1.4 12.5 195 270 147 220 137 239 0.64
Sequence Information
- Coding Sequence
- ATGCTCATCTTTCTTTTCCCTTTGATTTGTCAGCGCGAGCACAAGGAGAAGTGCTCTGCGCACGAGCGCGTGCGGCGCGAGGCGGCGGCGCTGGAGCGCGAGGTGGGCGCGGCGCGGGACGCGGTGCGCGCGCGGgacgcggcggcggcggcggcggggtTCGCGTTCGCGGAGGCGGCGCCCGGCGCGCCCGCGGCCGACGGCTTCGGCCCCGTGCCGCCGCTCGCGCTGCTCTCCAGGGAACAGGACCAGGCGCTCGCCGACCAGGGGGAGGGCACGCTCGACGTACGGTTGCAGAAGCTGGTGAGCGCGAAGCAGGCGCTGGAGTCGGAGGTGCGCAAGCTGAAGCTGACGCTGAACGAGGAACGCGCCGCCAGGCAGAACGGTGTCTCCAGCAGGCATGATCTCGACTATGAAAATGAATTGGAAGGGCTCCGCAAGTCAGTGTCGGATGCGAAGGGGCGGGCGGCGCGCGCGGAGGCGGAGGCGGCGCTGCAGGCGGCCGGCGTGGCGCGGCTCGAGGCGCAGCTGCAGCGGCTGCGCGCGCGGCAGGACCTGCACGACGACCAGGAGGAACAGCTCAAGCAGGAGCGCCGCAAGCTGCAGCGGGAGGCGAGAGAAGCACTCAACCGAGTCGAAGAGTTAGAGACGGAGAACAGCCACCTGACGAAGCGGCTTGATAAACTCAAGAACGCCAAATCTGCTCTGCTGAAGGACCTGTGA
- Protein Sequence
- MLIFLFPLICQREHKEKCSAHERVRREAAALEREVGAARDAVRARDAAAAAAGFAFAEAAPGAPAADGFGPVPPLALLSREQDQALADQGEGTLDVRLQKLVSAKQALESEVRKLKLTLNEERAARQNGVSSRHDLDYENELEGLRKSVSDAKGRAARAEAEAALQAAGVARLEAQLQRLRARQDLHDDQEEQLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -