Ppul036393.1
Basic Information
- Insect
- Plagodis pulveraria
- Gene Symbol
- -
- Assembly
- GCA_963890685.1
- Location
- OY982967.1:23564494-23566935[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.8e-08 1.2e-05 26.6 0.0 5 41 1 37 1 41 0.90 2 2 9.9 6.3e+03 -1.4 0.2 29 43 460 474 460 476 0.81
Sequence Information
- Coding Sequence
- ATGCAGTCTGCTATAGCTGCAGTACGAGAAGGAAGATTTAAAATTAGGGAAGCTAGTCGACATTTTAGCGTACCCCATAGTActctgataaataaattaaagggTAGAGTTCCAGAAGTGAGGAAAATGGGACGCGACACGTATTTTACAGCAAATGAAGAAGAtcttttagtaaaatatatcaTTGCCAATGCTAAAAAGGGTATACCTATAAAAAGACAAACATTATTAGAAACAgtgaaaaaaattttagatgacGATGAGAGAGTGACGCCgttcaaaaataatttgccAGGCAAAAAATGGGTTACTTTATTTTACCAACGACACCCTGAAATCACTGAAAAGTTGGCTGAAGGGATTTCCACTGGACGCGCCGCTGTTTCTGTAAAGGACATTCAAAGCTGGCACGAATCCCTTAAAGTCTATTTGACACAGGAGGACGCCTTAGACATACTTGAAGACCCTAAACGCATTTTCAATGCAGATGAGTCGGGGTTTCAAACATGCCCAGAATCAGGCAAAGTCTTAGGACCGGTAGGAATGaaaaatttttatcaaattaaatcTGGAAAAGAGAAGGAACAACTGACCGTCATGGTAACCATCAATGCTGCAGGTCAAGTTGTCACACCAATGATTGTTTACCCACTAGTGCGCATATCAAAAGAGATATCATCAAATGTGCCAGAGGATTGGGGAATCGGCAAATCGCCAAAAGGTTGGATGACTGGACCATTATACTACGAATACATCGCGAATATCTTTGATCCATGGGTAAAGAAGAACAATGTAAAAAAACCGGTCTTACTTTTAATAGATGGACATCGATCTCATTTGACATTGCAAGTGTCTCAATACTGTGCTGATAATCAAATCATAGCCTATGCCCTCTTTCGCAATTCAACTCATATTACTCAGCCAGCGGACGTATCCGTATTCAAATGCATGAAAAGTGGTTGGAAAAACACAGTGTTggagtacaaaaacaaaaccgGAAATCGACAGATTACCCGTGCTGGATTCGCACCTTTGCTGGCTAAAGTTTTTGAGGAGAAAGTGACTTCAGAAGTCATTTCGAATGGGTTCAAGAAATGTGGAATTTATCCCTTTGATGTGACTGCCATAGATATGACGCGATGCATGGATAATGAGACTCGAAGAACTGCGCCTGTGTCTCCACCCCCACGAGACATAGGAGTAAAAACTCTGTTGCTATTTGAGTCCTTTATGAGACGAGGCCGCGTAGAACAGTTTAGGCGTAGCAATGAAACCTGGGATGGAGATGAGACTGCGAAGGAGTTATTCTATGTCTGGAAAAAGTTTAGGCAGCACTGTTTGAACGTTGCTCCCAAGTACAGTGCAGAATATGTCCAATCTACATCGTCACTGCATAAGCATTATTCTGAAACATCTCCGCTCTCGAAAGAACCAGACCTTCCAGTAGAGTCTGAAACTTCCACCAGGTGTAGTACTCCGGTCTCCTTGGCACCAGATGCCTCTCAAATATTGGTAACGCCCGCCAGATCTTGTACTCTTCCAGTAGCGAAGGTGCTAGATTTTTCACAAATATTGGAAGCGGCCGCCAGAACCAGCTCTTCATCTATAGTCACCGCCGCCATATCTTGTACTTCTCCAACCACGAAGGCACCCGAATCGCACTTTGTAAGCGATGCTACAGAACTCCAAACCGTAAAATTTGCAAGCCCATCGACGTCGGAAAAGCATTCCTTAAATGATAACTTATTAGTGTCGAAGAAACAAAAAGAGATTAGTCCTGCTTTTGGACACCACATTATTTGGCCCTCAGATTCAcccattaaacattttaaaaaagaaCGTCTACCATTCGCAACCACATCCAAAAAGTGGCAAGATTACTGGTTGAGTAAGGAAAGTGACAAAGACGAAAAGAACAGAAAAGCCGAAATTAGGAAACGTGTACGGGAggaaaacaaagtaaaaaaatgtatgcaagcacctaaaaaaacaaaaagagcAGCTAGTAaggaaattaacaaaaaaactaaaataagaatcatcagAAGCGATACCAGTAGTAGTGATAGTGAAGCAAGGTCAGATGAAGTACCACAGGACAACAGCGAACGAGTCATAACTGATGAAGAAAATGACAACAGAGCAGATGAAAAAGAGAGTGCTCGTGTAaattcaggaggttttgacgtTGGAGATTTTGTGATATTTGATTACGGTGGTACACATTTTGTCGGACAAATCAAGTCAATAAATGAAGAAGGTGCATTGATCCAATCAATGCAAAAGTCACTCAAAAATTGGAAATGGCCGGTTAAAGAGGACTTAGGCTTATACGGAATTGGTGATATAAAAGAGAAAATTAGAGAACCAAAACTAATACACCGAAAAAGGGGAATTTACCACGTATACGGATTTGAAAAGTATACagattatattatttag
- Protein Sequence
- MQSAIAAVREGRFKIREASRHFSVPHSTLINKLKGRVPEVRKMGRDTYFTANEEDLLVKYIIANAKKGIPIKRQTLLETVKKILDDDERVTPFKNNLPGKKWVTLFYQRHPEITEKLAEGISTGRAAVSVKDIQSWHESLKVYLTQEDALDILEDPKRIFNADESGFQTCPESGKVLGPVGMKNFYQIKSGKEKEQLTVMVTINAAGQVVTPMIVYPLVRISKEISSNVPEDWGIGKSPKGWMTGPLYYEYIANIFDPWVKKNNVKKPVLLLIDGHRSHLTLQVSQYCADNQIIAYALFRNSTHITQPADVSVFKCMKSGWKNTVLEYKNKTGNRQITRAGFAPLLAKVFEEKVTSEVISNGFKKCGIYPFDVTAIDMTRCMDNETRRTAPVSPPPRDIGVKTLLLFESFMRRGRVEQFRRSNETWDGDETAKELFYVWKKFRQHCLNVAPKYSAEYVQSTSSLHKHYSETSPLSKEPDLPVESETSTRCSTPVSLAPDASQILVTPARSCTLPVAKVLDFSQILEAAARTSSSSIVTAAISCTSPTTKAPESHFVSDATELQTVKFASPSTSEKHSLNDNLLVSKKQKEISPAFGHHIIWPSDSPIKHFKKERLPFATTSKKWQDYWLSKESDKDEKNRKAEIRKRVREENKVKKCMQAPKKTKRAASKEINKKTKIRIIRSDTSSSDSEARSDEVPQDNSERVITDEENDNRADEKESARVNSGGFDVGDFVIFDYGGTHFVGQIKSINEEGALIQSMQKSLKNWKWPVKEDLGLYGIGDIKEKIREPKLIHRKRGIYHVYGFEKYTDYII
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01209173;
- 90% Identity
- iTF_01209173;
- 80% Identity
- -