Ppul029708.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Plagodis pulveraria
Gene Symbol
-
Assembly
GCA_963890685.1
Location
OY982963.1:28888724-28891763[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 2.4e-09 1.5e-06 29.4 0.0 4 39 19 54 17 60 0.88

Sequence Information

Coding Sequence
ATGGCTCCTGTCAAGAAGAAGGAAAATGTTAGAAATCTGCGCTACCCAGAGTCGGCCATGCAATCAGCTATAAAAGCATGTCGCGAAGGTCGTTTCAAATTAAGAGAAGCAGGACGACATTATGGTGTGCCACACAACACGCTCAGTAACAAATTAAAAGGTGTGGTGCCAGAATCAAGGAAGATGGGTCGTGCGACATATTTAACTGATAAAGAGGAAACGCTTTTAGTTTCGTATATAGAAGCAAATGCTAAAAAAGGCATACCACTAAAACGATCAACATTAGTcgatacagtaaaaaaaattatcgatGAGGATGGACGAGAAACGCCCTTTAAATGTAACCGTCCGGGGAGAAAATGGGTTGACTTGTTTAAGAAGCGTCACCCGCAGTTAAGTGAAAAAAAGGCGGAGAGCATATCGACAGCACGAGCAAATGTTTCAGAGGTTGATCTACGACAATGGTTTGAGTCCGTTAAGCAATATTTAAACGAGGAACAAGCGTTGGAAATCCTTGATGACCCAAAAAGAATATATAACGCAGACGAATCTGGATTTCAAACTTGCCCTCAGTCAGGACGGGTAATAGGGCCTGTGGGAATGAAAAACTTTTTTGAGATCAAATCAGGTAAAGAAAAGGAGCAGCTTACTGTAATGGCCTGTATTAATGCCGCGGGCGAAATTATTTCACCTATGATAGTTTATCCATTAGTCCGAATTTCGAAAGATATAGCGTGCAATGTTCCATCAGATTGGGCCATAGGAAGATCACCTAAAGGTTGGATGACAGGTCCATTGTACTATGAGTACATAGCAAATGTGTTTGATCCCTGGTCAAAAAGCCAAAACGTAGAGAAACCGGTATTGCTTTTAGTTGATGGCCACCGCTCACATATGACTATGCAGGTATCTGAGTACTGCGCAGAAAATCAAATACTAGTGCACGCGCTTTATCCAAACTCGACGCACATTACGCAGCCCGCAGACGTAtcactttttaagtgtttaaaaagTGGTTGGCAAAACACTGtgttcgaatataaacaaagcacCGGCAATAAGCACATTACCCGCGCTGGATTTGCACCCCTGCTATCCAAAGTATTTCAACATAAAGTCACACCCCAAATAGTAGCAAACGGTTTTAAACGATGTGGAATATACCCGTTTGATCCTTCAGCAGTAGACTATAGTAAATGTATGGACAATGAAGTGCGAAAAGTTTTACCAAGCGCTACTGAAGTCGGAATAGAAACAATTCTTTTGATGGAGTCCTTTATGAGGCGCGGCCGGGCGGAACAATTCAGGAGGGCTGAGAATGAAGAATGGCAAGGTGATGAATCAgcaaaagaattattttatgtgtgGAAGAAGTTCCGTCGGCACTGTTTGCAAGAAAAAGttgctgaagatgtggttacaGAAGATAATTTGCAAGAACATGGTACCACAAATGTGTCTCCTATTTTAAATGTACAAGAGGGTAGATCCTCACCCTGTCAAGATTGTATGCCTCCGTCTCCCTCCATTATGAAAACACCAGCTTCACCTATAGAGTCCACTACGTGTAGTTCAGTGACATCTGCTGATAGAAATTACCAATCTCCCAAACCACATACGACCCCTGAAGTAAAAGAACAGGAAGCTAGCGCCATTTATAACCAACAGTATTTTCCTCCGAGTCCCTTTATTAATAAAGCGCCATCAGCAGCTTCAGAAAATAACTCCACTAGGCGTATCTTAGACAACTCTCCAAAAACAAACTCATATCCACAATCACAAAGTTCTGTATCAACAAAAGAGAATTCGCCAATAAAGAAACATACCAAAGAACGTTTGCCTTTAGCAGTTTCATCATCAGCATTtcgtgaatattttaaaataaaagaacaagAGAAGGATAGAAAAACTGAAGAGGTActgaaaagaaaaagaaaacgcGAGGAAATTAGAGCCAATAAAATTCAAAAAGCACCAAAAGCGAAAAATTCTAAACAACTCAGTGAAAGAAAATTGACAAGCACAAAAACAAAAAGACAAGCTATATGGAGTGATAGTGAAACGGAAAGTAATGAAGACAAAACATCAGAACAAGACGGGCGAGAAGTAAATGAAAGTACTAATTCCGATTCCGAGAACACACCTCTCAGCAGAAATAATACAAAGAATCTATCTAAAGGAGACTATGTCATAATAACTTACGAAGGAGAATACTTTCCGGGAGTGGTGGAGAGTGTTGATCAGCATTGTTTTGAAATAAGCACAATGACTTTTTCCACGGGAAACACTTTTAGGTGGCCCGAGAAACCAGACAAAATATGGTACTCTGGAAAAGATATAGTAGAGCGTATAGATACACCAGTATTAACCAACAAAAGAGGTTTTTACCTGATCAAAGAAATGTCTAAATTCCTGCCTTTTACTGTTTAG
Protein Sequence
MAPVKKKENVRNLRYPESAMQSAIKACREGRFKLREAGRHYGVPHNTLSNKLKGVVPESRKMGRATYLTDKEETLLVSYIEANAKKGIPLKRSTLVDTVKKIIDEDGRETPFKCNRPGRKWVDLFKKRHPQLSEKKAESISTARANVSEVDLRQWFESVKQYLNEEQALEILDDPKRIYNADESGFQTCPQSGRVIGPVGMKNFFEIKSGKEKEQLTVMACINAAGEIISPMIVYPLVRISKDIACNVPSDWAIGRSPKGWMTGPLYYEYIANVFDPWSKSQNVEKPVLLLVDGHRSHMTMQVSEYCAENQILVHALYPNSTHITQPADVSLFKCLKSGWQNTVFEYKQSTGNKHITRAGFAPLLSKVFQHKVTPQIVANGFKRCGIYPFDPSAVDYSKCMDNEVRKVLPSATEVGIETILLMESFMRRGRAEQFRRAENEEWQGDESAKELFYVWKKFRRHCLQEKVAEDVVTEDNLQEHGTTNVSPILNVQEGRSSPCQDCMPPSPSIMKTPASPIESTTCSSVTSADRNYQSPKPHTTPEVKEQEASAIYNQQYFPPSPFINKAPSAASENNSTRRILDNSPKTNSYPQSQSSVSTKENSPIKKHTKERLPLAVSSSAFREYFKIKEQEKDRKTEEVLKRKRKREEIRANKIQKAPKAKNSKQLSERKLTSTKTKRQAIWSDSETESNEDKTSEQDGREVNESTNSDSENTPLSRNNTKNLSKGDYVIITYEGEYFPGVVESVDQHCFEISTMTFSTGNTFRWPEKPDKIWYSGKDIVERIDTPVLTNKRGFYLIKEMSKFLPFTV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00790196;
90% Identity
iTF_01209169; iTF_01209168;
80% Identity
-