Basic Information

Insect: Plagodis dolabraria
Gene Symbol: -
Assembly: GCA_963854805.1
Location: OY978444.1:25520710-25529236[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 7.4 1.2e+03 2.0 1.2 1 23 54 77 54 77 0.94

2 20 0.0039 0.65 12.3 2.4 1 23 84 107 84 107 0.98

3 20 4.9 8.1e+02 2.6 3.9 1 23 189 211 189 211 0.97

4 20 0.002 0.33 13.2 1.0 2 23 217 238 216 238 0.97

5 20 2.5 4.1e+02 3.5 1.5 1 23 244 266 244 267 0.94

6 20 0.2 33 6.9 3.4 2 22 501 521 500 521 0.95

7 20 5.7 9.4e+02 2.4 0.4 1 20 621 640 621 643 0.70

8 20 0.62 1e+02 5.4 0.4 2 23 778 799 777 799 0.96

9 20 0.088 15 8.0 1.0 3 23 878 898 877 898 0.98

10 20 0.036 5.9 9.3 0.5 1 23 906 928 906 928 0.97

11 20 0.14 23 7.4 3.4 1 23 968 990 968 990 0.95

12 20 0.00028 0.046 15.9 4.0 1 23 998 1020 998 1020 0.99

13 20 0.37 61 6.1 0.6 1 23 1172 1194 1172 1194 0.97

14 20 0.0054 0.89 11.9 0.3 1 23 1200 1222 1200 1222 0.98

15 20 0.0093 1.5 11.1 1.6 1 23 1288 1310 1288 1310 0.95

16 20 0.018 2.9 10.2 0.9 1 23 1316 1338 1316 1338 0.95

17 20 0.0077 1.3 11.4 2.6 1 23 1428 1450 1428 1450 0.97

18 20 0.00019 0.032 16.4 1.4 1 23 1456 1478 1456 1478 0.99

19 20 0.36 59 6.1 2.1 1 23 1569 1591 1569 1591 0.96

20 20 0.017 2.7 10.3 3.9 1 23 1608 1630 1608 1630 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	7.4	1.2e+03	2.0	1.2	1	23	54	77	54	77	0.94
2	20	0.0039	0.65	12.3	2.4	1	23	84	107	84	107	0.98
3	20	4.9	8.1e+02	2.6	3.9	1	23	189	211	189	211	0.97
4	20	0.002	0.33	13.2	1.0	2	23	217	238	216	238	0.97
5	20	2.5	4.1e+02	3.5	1.5	1	23	244	266	244	267	0.94
6	20	0.2	33	6.9	3.4	2	22	501	521	500	521	0.95
7	20	5.7	9.4e+02	2.4	0.4	1	20	621	640	621	643	0.70
8	20	0.62	1e+02	5.4	0.4	2	23	778	799	777	799	0.96
9	20	0.088	15	8.0	1.0	3	23	878	898	877	898	0.98
10	20	0.036	5.9	9.3	0.5	1	23	906	928	906	928	0.97
11	20	0.14	23	7.4	3.4	1	23	968	990	968	990	0.95
12	20	0.00028	0.046	15.9	4.0	1	23	998	1020	998	1020	0.99
13	20	0.37	61	6.1	0.6	1	23	1172	1194	1172	1194	0.97
14	20	0.0054	0.89	11.9	0.3	1	23	1200	1222	1200	1222	0.98
15	20	0.0093	1.5	11.1	1.6	1	23	1288	1310	1288	1310	0.95
16	20	0.018	2.9	10.2	0.9	1	23	1316	1338	1316	1338	0.95
17	20	0.0077	1.3	11.4	2.6	1	23	1428	1450	1428	1450	0.97
18	20	0.00019	0.032	16.4	1.4	1	23	1456	1478	1456	1478	0.99
19	20	0.36	59	6.1	2.1	1	23	1569	1591	1569	1591	0.96
20	20	0.017	2.7	10.3	3.9	1	23	1608	1630	1608	1630	0.98

Sequence Information

Coding Sequence: ATGCTACAGCAGATGTCCTCGCCGCTGAGCGCGCAACTCGGCGAGGTCACAGCTATCGCGCGCCCCCTCGAAGGCCGCCTCTGCGTGGACGTCCTCTCGGAGGCCTCGTCCGACGCAGCGGAAGATTTTGAATTACCGCATTGCAAGATAAGGAGAAATTACAACTGTACGAAGTGCACGTTCTATACGCAGAACCCGCGCGCTTATCTCTTGCACACGCGCGACGTTCACTTTGGAAGATTCAAGATATACGAGTGTCCACATTGTGTATATGCCTCGCAACACCAACAAAAGCTTATCAGACATATGAAGATGGTGCACGGAGGGTCCCCTATGCCTTCAGGGTCGACCCTCAGAGTGGAAATGGAACTTCCGGCTAGAACGGAAACGGAACATCCCGCTACTAACAGTCCCGCGGGCAACATGGAGCGAATGGAAGATTTACTCGAAGAAATCGAGGAATGCGACGATATGATTGACGAAGACGGTGAAGATCTGTCCGAGCACATCGACTACGGTGACGTTAGGGGTAACTTCTCGGGACCCAAAGGGAAGAGCAGGTTTTTCTCGTGTGAAAAGTGCAACTACGTTACCCACATAAAGGCCAGATATACCAAGCACGTGAAGTACCACTCAATGCCGATGATAAAGTGCACGATGTGCGACTTCCGCACTCCATACAAATGGAATTTGGATCGTCACATGAAGAACCATGGCGGGACCGGGAGCTTCGTGTGTTCTAAGTGTACCTTCACCGCGGACATCAAGCAGAGCCTGACCGTTCACGAAATGAATCATCACAATCCGCCGGTGGGGCAGGTCGGCAGTCGACGCCGCAATCGAGTGGGCGGCAGTGACTTGACGGCCGCCGACCAGATGGGCGCTCTCCCCAAGGAGGAGGAAAGCAGCGGCGATTCGCACTCCTCGCATTCGGCCTCGGAAACCATGGGCTTACAATACGCAGAACGAGAGATGGTCAGCTGCAATAGCGATTCAAACGACGCCAACTCGTCGCACGCAGATCTAAACAGAGATGGATCAAATGAAGCTCCCGGCCAACATTCACCCAACTCCGGGACCGACGACCCGAAATCACAAAAACAGAGCCGGAAGGCCCCTCGGCCGATTCCGCAACTCATCCCACTGAACGCGTCAACTCCCAATCAAAAGACATCCGGCGAACCGCCAGCGAAGAAATTCAAAGAATCCACAAGCTCTGATTTATACGAAAAAATCGAAAATTTACCGGAAGACATCACCCTAATACCAGTAAATAATGTTCCATCTAAAGAAAGCACAGTACGTAAGAAAAACAACTCGTTTTTTGACAAATTGAAAGAAAGGCTCTTGACTGAAACAGGCGAAGAAGGATCACTAAAATGCAAAAATTGCGGGTTCGACAGTAAATGTCTGTCGGAACATTCCGTGCACGAGAAAAATTGCACCGCTCAGTCCAACCGCATTACGATGAATGCGGCGCTTCCAACTATGGGCTCCACTCGCTGCCAAAACTGCAGACATCGATGTAAATCTAGCGCGGACTTATACGTGCATATGCAGACTTGTGGGAAGAAGAATAATGCCTCTAATATGAGTGAAAATACTATGGATACCAAGCTTAATAACCAAGCGTCGACATCGCAAGCTGAAAAAGAAGCGGAGCCTCACCCTATGGAAAACGTAGTTTTTGTCTGGAATAACATCAGCCAAGATTCCAACAAATTCGAGAGACCTTTAGATATCAACATTAACGACGATTCAACTACTACTGAATTAAATAGACATTACGACACTGAAACCGTGGACGAAACTGAGGGCATGAACTTATCACCAAACAGTTTGAGTCTCGGCAAAAACGTGTACAAATGTCCCGATTGTAAATTCTGGGCAGCAACAGCATCCAGGTTTCACGTTCATATTGTTGGTCACTTGAACAAAAAGCCTTTCGAGTGTTCTTTGTGTAAGTACAAATCTAACTGGCGCTGGGAcataacaaaacatataaagttGAAGTCTGCGAGAGACCCGGAGCATAATGAGGCCAAAGTTCTAATGACAGACGAAACCGGCAGAAGAAACTACAGCAAATACAACAAGTTCTTAGCAGTGCCAGTGATGAATGAAAATGGCGAGAACGAGTTCCACTACATAGATCCGAACACGTCTGTCGATGCGTCCATGGAAATGGATGAAACGTATAACGAGTCCACAGACATGCAAGCACTGCCTTATGAAGTGCAACCTCTCAACCTACAGACACAGCCAACTGACAAGTACAATATAATGGACGGTAGAAATCAAGACCCTAAAAAGCCTAAGAAGACTTTGTGGAAATGCAAAAAATGTAATTACAAggaTCCATCAAAGGAAGCCTTGTTGGAACATGTCAGACAACATTCGAAAGGAGGTGCGTTGGACGACTCTTCACacaacaagaaacttgaaaacgcTCCTGATCCAGCGGATTTAGCATACCGCTGTGGACACTGTAATCAGCTTTCGAATTGGAAACACGTCATCCAGAGACACTGTCGTTTGAAGCACGACGGAATAATCAAAGTCATAACCACAGTGAAACTGAAACCGGACTTATCTCAAGTACCTGGAGGGGAAGGCGTTTACAGCGATCTCTGCACTAAGTGTCCTTTCAAGGCTAACGACAAAAAACAACTCCAAGAACATTTACAACAACATCAACCTTCGCCGGAATCTATCTTCAAATGTTATTTCTGCCCTTACTTTGTCAAAGACGAACAAGATTTGATCCAGCACCTCTTGTTACATGGAATAACTGACCCAGAAGATTATATTGCCAAAGCGATGGGTTGCAGATCTCCTTTACCGGACCGAATCCTTACCAACGCCGATACACTACCCCCATCCGGTACTGCTACGAAACGTCACAAGTGTACTGAATGTCCTTATGAGACGAATAGCAAATCTCAGTACATGTATCATGAACAATTCCATCGGCTTCCAGCAGACACCCCTTACAAATGCCCTGAATGTAATTACAGTGTTTCGAAGAGACACTTGCTTCACCAACATCTGAGAGTACACGGCATTCATCCATCATCAGATCGCAAGAAATATGAATCAGAAGCAGAGTTAGAAGCAAACATCCCTTGCATAAACAAATCACCATTTGTATGGGTATCTGCAAGAAATGAATTTCACAAAATGTACAAGTGCCGCTATTGCTCTTACGTTAACTCTCAGCAATGTAAATTACCTAACCATGAAAAGATTCATTGCATGGAATTTGAGAACAGCGATGTTATTATATACAAATGCTTAGAATGTAAATTTACGTGTGACGACGCCGAAAAAAGCGCTGAACATTCCAAAAAGCATGGCCTATTGTATGGTCGCATCTATAGTTACGTAGAGGACGATCTTCCCGACGAAGAACAAGTAGCAAAATTACGCAGAGTCATTGAACAAGAAAAGGCTTTGGAAGAATCTGCTAAAGAGGAAAGCGCTTCAGCTGAATCGTCGGAAAGTAAACTTATGTATTATTGTCAGAGATGTCCagctaattattttaatgaaagcgAAATTAAAGCACACGAAAAGTACCATGATACTGCTTTAGAACACAAATGTAAAGTGTGTGAATATTCCGTACCTGAAGAAACAGAATTGACTGCCCACATGACTGTGCATTCAGATAATTACCACATCAGAACAAATATGTACAAATTCGTCCACAACTATCACTCTCTGTATAAACCGCCCCTTTTAGAATCGATCCGCAATCCAGATTCTCCAGATATTTTGTGGGTAGCGTTAGCCAACAAACCAATTGAATATACAGAAACAGTTCAAAAGAAATTTGAATCCAAACATACGCCCAAACAATATCATTGCAAAGAATGTCCTGCCAAATTTTTCAAGAGCTCTGCTCTCTCCTATCACATGGGGTTACATGGCGGAGAAGGTGAACATAAATGTAAGAAATGCAGTTATGCCGTAAAAAATATTGGTAATTTAGCTAAACATGAAATTTTGCACGAAATGGAAAACAAGCCGCCTGGTCGCGATTATGATTCCGGTGAAGACATGGACTACAAAAATATACCACTCTCTGGCACTGATTTATTCCAAAGAAAGACGGAAGCTTTAAAAAGGGTAATGATCGACAAAGATAAATTAGTCAAACCTAATGATCACTTTCCGCCAGTACTCCAAGCCGACCCGCAGTTCGGTTATTTGATGCATGGCAATCCAGAATTTATATATCCTACATACCTGAAAAACGGTCGTCAAAAAGAGAAAAGGTACAAATGTCATAAGTGCCCATCCGCTTTTGAAAAAAGAGAACAGTACAAGATACATTTATCACTTCACGGGTCAAAACAAAGATATAAATGCGAATTATGTGACTACTCCGTAAAGTATTACGCTAACTATGTTCAGCATATGAGAAAACATCAGATGAATGATGAAGCTCAAGCAGAAAGGAAGAAGGGCGGCAATGGTTTCGCTGAACCAGATAATCAAGAAGACGTGAAACTGGATGACAGCGGGGATAATATCAAGTTAGCAATCAAAACAATGCCCAAAGGTGCACCTAAGACCGATTTTCAGCAATTCTCGATCAGAGACCAGCAAACTCTGAGACTCATGCAGCGTAGAAGATCCATGAACGGCGGAAAGGATGTCTGCTCCAATGAAACGTCACCAACTAAAGAACGCAAGTTGCACATGTGTCTTCTATGCCCATACACAAACCAACGCCAAGATGCTCTTACCAATCACTATAGACGACATGATCCCGATATGAGCTCTCAAAATACTACTATGTTCAACATTGGAAATCATAAATGCTCCTTCTGTGACTTAGTGGTTGTTCAATCACATTTCCTGCGCGAGCATTTGAAAACTCATTTTAGCTATCATAAAACTCTGACACCTGAATGTTTTGTAGCAAACGAGAATGTGACCTttactatcggtaaagtggaAGAAGAAAGAGAACCTCTTGATCTCAAACTGGATGTgaaaagcaaaattatttttgatgatgaaaaactatatgttaatattaaaactgGTGAATTAGTTGTGGAATAG
Protein Sequence: MLQQMSSPLSAQLGEVTAIARPLEGRLCVDVLSEASSDAAEDFELPHCKIRRNYNCTKCTFYTQNPRAYLLHTRDVHFGRFKIYECPHCVYASQHQQKLIRHMKMVHGGSPMPSGSTLRVEMELPARTETEHPATNSPAGNMERMEDLLEEIEECDDMIDEDGEDLSEHIDYGDVRGNFSGPKGKSRFFSCEKCNYVTHIKARYTKHVKYHSMPMIKCTMCDFRTPYKWNLDRHMKNHGGTGSFVCSKCTFTADIKQSLTVHEMNHHNPPVGQVGSRRRNRVGGSDLTAADQMGALPKEEESSGDSHSSHSASETMGLQYAEREMVSCNSDSNDANSSHADLNRDGSNEAPGQHSPNSGTDDPKSQKQSRKAPRPIPQLIPLNASTPNQKTSGEPPAKKFKESTSSDLYEKIENLPEDITLIPVNNVPSKESTVRKKNNSFFDKLKERLLTETGEEGSLKCKNCGFDSKCLSEHSVHEKNCTAQSNRITMNAALPTMGSTRCQNCRHRCKSSADLYVHMQTCGKKNNASNMSENTMDTKLNNQASTSQAEKEAEPHPMENVVFVWNNISQDSNKFERPLDININDDSTTTELNRHYDTETVDETEGMNLSPNSLSLGKNVYKCPDCKFWAATASRFHVHIVGHLNKKPFECSLCKYKSNWRWDITKHIKLKSARDPEHNEAKVLMTDETGRRNYSKYNKFLAVPVMNENGENEFHYIDPNTSVDASMEMDETYNESTDMQALPYEVQPLNLQTQPTDKYNIMDGRNQDPKKPKKTLWKCKKCNYKDPSKEALLEHVRQHSKGGALDDSSHNKKLENAPDPADLAYRCGHCNQLSNWKHVIQRHCRLKHDGIIKVITTVKLKPDLSQVPGGEGVYSDLCTKCPFKANDKKQLQEHLQQHQPSPESIFKCYFCPYFVKDEQDLIQHLLLHGITDPEDYIAKAMGCRSPLPDRILTNADTLPPSGTATKRHKCTECPYETNSKSQYMYHEQFHRLPADTPYKCPECNYSVSKRHLLHQHLRVHGIHPSSDRKKYESEAELEANIPCINKSPFVWVSARNEFHKMYKCRYCSYVNSQQCKLPNHEKIHCMEFENSDVIIYKCLECKFTCDDAEKSAEHSKKHGLLYGRIYSYVEDDLPDEEQVAKLRRVIEQEKALEESAKEESASAESSESKLMYYCQRCPANYFNESEIKAHEKYHDTALEHKCKVCEYSVPEETELTAHMTVHSDNYHIRTNMYKFVHNYHSLYKPPLLESIRNPDSPDILWVALANKPIEYTETVQKKFESKHTPKQYHCKECPAKFFKSSALSYHMGLHGGEGEHKCKKCSYAVKNIGNLAKHEILHEMENKPPGRDYDSGEDMDYKNIPLSGTDLFQRKTEALKRVMIDKDKLVKPNDHFPPVLQADPQFGYLMHGNPEFIYPTYLKNGRQKEKRYKCHKCPSAFEKREQYKIHLSLHGSKQRYKCELCDYSVKYYANYVQHMRKHQMNDEAQAERKKGGNGFAEPDNQEDVKLDDSGDNIKLAIKTMPKGAPKTDFQQFSIRDQQTLRLMQRRRSMNGGKDVCSNETSPTKERKLHMCLLCPYTNQRQDALTNHYRRHDPDMSSQNTTMFNIGNHKCSFCDLVVVQSHFLREHLKTHFSYHKTLTPECFVANENVTFTIGKVEEEREPLDLKLDVKSKIIFDDEKLYVNIKTGELVVE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00927143;
90% Identity: iTF_01209850;
80% Identity: -