Pdol052880.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Plagodis dolabraria
Gene Symbol
-
Assembly
GCA_963854805.1
Location
OY978467.1:7392404-7408777[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 35 2.5 4.1e+02 3.5 0.3 1 23 58 80 58 80 0.92
2 35 2.4 3.9e+02 3.5 0.1 2 23 104 126 103 126 0.94
3 35 0.0015 0.24 13.6 0.1 1 23 147 169 147 169 0.98
4 35 0.0014 0.22 13.8 0.9 1 23 173 195 173 195 0.97
5 35 3.5 5.9e+02 3.0 0.2 1 23 251 273 251 273 0.95
6 35 5 8.3e+02 2.5 0.6 2 23 297 319 296 319 0.91
7 35 0.0017 0.28 13.5 0.5 1 23 340 362 340 362 0.97
8 35 0.0037 0.61 12.4 0.3 1 23 366 388 366 388 0.97
9 35 0.0028 0.47 12.7 0.1 2 23 395 417 394 417 0.96
10 35 0.1 17 7.9 1.2 3 23 459 480 457 480 0.97
11 35 0.017 2.8 10.3 0.1 1 23 551 573 551 573 0.94
12 35 0.19 31 7.0 2.7 2 23 578 600 577 600 0.93
13 35 0.11 18 7.8 0.4 1 23 728 750 728 750 0.95
14 35 0.072 12 8.3 6.6 3 23 756 777 754 777 0.97
15 35 1 1.7e+02 4.7 0.5 1 19 818 836 818 836 0.98
16 35 2.2 3.6e+02 3.7 0.1 2 23 864 886 863 886 0.92
17 35 0.0053 0.87 11.9 0.2 1 23 907 929 907 929 0.98
18 35 0.00013 0.021 17.0 0.5 2 23 934 955 933 955 0.95
19 35 0.018 3 10.2 1.1 1 23 962 985 962 985 0.96
20 35 0.013 2.1 10.7 0.4 2 23 991 1013 990 1013 0.94
21 35 0.079 13 8.2 0.7 1 23 1019 1042 1019 1042 0.95
22 35 0.027 4.5 9.7 0.1 1 23 1048 1070 1048 1070 0.97
23 35 0.071 12 8.3 0.2 1 14 1076 1089 1076 1092 0.91
24 35 3.6 5.9e+02 3.0 0.2 3 23 1126 1146 1124 1146 0.94
25 35 0.006 1 11.7 0.1 2 23 1173 1195 1172 1195 0.93
26 35 0.0067 1.1 11.6 1.8 1 23 1216 1238 1216 1238 0.96
27 35 0.0016 0.27 13.5 0.3 1 23 1242 1265 1242 1265 0.96
28 35 9.4 1.6e+03 1.7 0.2 1 19 1306 1324 1306 1329 0.77
29 35 0.26 44 6.5 0.1 2 23 1353 1375 1352 1375 0.93
30 35 0.0035 0.58 12.4 0.4 1 23 1396 1418 1396 1418 0.96
31 35 0.045 7.4 9.0 1.0 2 23 1423 1444 1422 1444 0.91
32 35 0.0036 0.6 12.4 2.0 1 23 1451 1474 1451 1474 0.97
33 35 0.56 92 5.5 4.6 1 23 1479 1502 1479 1502 0.97
34 35 0.044 7.2 9.0 2.5 1 23 1508 1531 1508 1531 0.96
35 35 0.00068 0.11 14.7 2.5 1 23 1537 1559 1537 1559 0.97

Sequence Information

Coding Sequence
ATGGCGGAGGTTTTATTCAGCAAAGACCGATCCAGCTATATAGAACAGTACATAGGATTCCTGGGGATTAGTTGGAAGCAGAAACTGGATGACTTTCCCGACCATCGACACAATGCGGCCATTATCTTAGAATGTTCCAACGTGTGTCCAttcaaatactataaaaacGTGTTTCTTTGTGCATACTGCCAGTTCACTTCACCAGATTTTGTTGATCTAAAAGAACATAATAATGAACATAAAGAAAGAATTTTTGCTCTGGGCAATGTCGGACCCAATGACATATTCAAAGTAGACGTATCAAACCTTAAATGTGAACTGTGTCAAGAAAGTATGAAAGATATACCTTCACTAGTTGAACACCTGATCAAAGAACATAACAAGCCTATCAATAGAAAATTCAAACCCGGCGTCATCCCTTACTTACTTAGCAATGGATTTGAATGCGCTGACTGTGACGTTACTTTCAACTCATTTGTTccattaaatatacatatcaaTAAACACTATCCTGACTTCATTTGCAGCATATGCGGTGAAGGCTTTTGTAGTTTATTTAAACTAAATGGCCATTTGCTCAGACACAAGCAGAAGCAAACAAAATTCAAATGCTCCAATTGCGGAACCCTCGCCATAAAATGGATACAGAGACGAAACAATTTGACGACGGGCTTTGGTGACTCACGAGACAATGCGGCTATTATCTTGGAGTGTTCCAACATGTGTCCATTCAAATTCAAGAAAAACGTATTTGAATGTGCTTACTGTCAGTTCACGTCCCCAGAATTCGGTGCTATCAAAAAACATACGGAAGTCCATCAGGACAGAGCTAAAGCTGTTCAGCTAATGAGGTCCAGCATGGTGTGCAAAGCAGATATAACGGATCTAAGATGTGAACTGTGTCAGGCAAGCATGAAAAGCATATCAATGCTGTGTGAACATTTGACTGAAATACACAAGAAGTTCATGAAAAAAGAATATGAGCCCGGCGTCGTACCTTACTTGATAAGCAAAGATTTCACATGCGCAGACTGTGGCCTCAATTTCGATCGTTTTGTGAAATTAAATCAACACGTGAATCAACACTATCCTAATTTCATCTGTTCTGACTGCGGTCAGGGCTTCGCTAGTGCGCAAAGAATGCAAAATCATTACTCATCACATCAGAAAAAAGCTCAGGTTAAATGCTCCATATGTGACGAAATCTTTCCTTCAGCATCTCGTATGCGTGACCATCTCATGTCTATGCATAACATAGaaCCTGGAAAATGGAGGCCGTCAATCGGAGACTATCGCGACGCACGTGACAATGCAGCGATAATCCTGGAGTGTTCCAACATATCTCCCTTTAAGTGGCGTCGCAATTCTTTCGGTTGCCCCTACTGTTCATACAACTCGTCACATTTTGAACTctataaaaatcatattatgtcTGAACATTCGGACAGATCAAACCGAATCGAAATCCTCCGCAACTCGCGTCGTAACGATCCTATCAAAGCAGATGTGACGAATCTAACATGTGATCTCTGTCAAGAAAATATCGATAACATAGAAATACTAATGGACCATCTTCTCGAACAACACAACAAACCTATTATTACAGATTATAGTTCAGGCATCGTTGCTTATCTCTTATCAAACAATAGTTTCATATGCCCTTACTGTGCGATTAATTTTGATCGATTCAAAACATTAAACGCCCATGTTGATGAGCATATCCTTCAGTGTGTTTGCACTCAGTGTGGCCAGTTATTCTCAGGCGCGAAGAAACTTGGTAGACATATTCACCAATACCACGCAGAGACTCAAAAATACGATGACTATGGAGATTCTAGACGTAACGCGTCAATTATTTTAGAATGCTGTAACGTGTGTCCCTTCAAATGGTACCGAAATGCGTATGGGTGTCCCTGCTGCGCATATACAACACCAAATTTTATAGACCTCAAAAATCATATATCAGGAAACCATCCCACGAAATCCGACAGAAGCAGGATTCTCCGAAACTCACGACCTGGTGACATAGTCAAAATAGATGTTACAAATTTGCAATGCGATCTGTGCCAAGAAAAAATCAAGGATATTGCCACAATAATGAATCATCTAGTCGAAAAACACGATAAACCTATAGTTATGAATTACGGCTCGGGTGTCATGTCATTTCTGTTGGAGGGAGGATTTGCATGCGTCTACTGCAATGAATCTTTTGATGGTTTTAATTTCTTAAACTCTCATGTGAATGATCACAACCTTAGTTGTGGATGCTCTGAATGCgggcaacatttttttaatgaagatcGACTCCGAAAACATATCATGAGATGTCATGAAAAACCCCGTAGTACCAAACTGAAGTCTAAATTTGGCTACTATGATGATGCTAGACATAACGCTGCAATTATCTTagattattcaaatattagcCCTTTTAAATGGTACCGAAACGTATATAGATGTGCTTATTGCGAATTTACTTCGGCAGATTTTGGTTCACTCAAGACCCATGATCACCCTCAATGCCCAAAAACTGAAGCCCTGCGAAACTCTCGTCCATCTGAGGTTCTTAAAGCAGACGTTTCAGATCTCAAATGCGAGCTCTGTGACCAAGCAATCCAGGATTTGAAAACTTTGGTTGATCACTTGAGTGAAACTCATggacttatttttaaaaaacagtaTGGCTTTGGTATCGAGCCCTTCATGGTACGTGAAGGATTCAAATGTGCAGATTGCGGCCAACAATTTGACGGGTTTATAAAGTTAAGCCAGCACATCAATGTACATTACCTTAATTGCGTCTGTCCTGAATGCGGTCAGGCTTTTTCCAAGCCCGAAAAGTTAAGAAGTCATTTTGAAGTACACAAAAGAAAAACTGGTCGCTATAAATGCTCGGAGTGTGGAGCTCGATTTGACTCAAGATACAAAAAAGATCTACATCTAAAGTCAGAGCACAATATTCTCGTCAACAAATGTCCATATTGTGATGAGTCCTTCGAATCTTATCCGCAAAGGTTGCAACATTTGAATGAGAAGCATGGCAAAAAGACTGATTTTCCGTGCCGTATATGCCCGGCAGTATTTAAAACGGCTACTAAACGATCTCTACATACTAAATCATTTCATTTTAAAGACAATAAATTTCCTTGCACCATTTGTGAATATAGGTCCGCAAATTTAATGGGACTGAGAATGCATATGGTAAAACACAATAAAGAGAAAAAGTATAAATGCGAAATTTGCCCAAAAGCATACCGTCAACCTGGAAAAAGGAGGCTGAAAGTCGGGGAGTATAACGACGCGCGAGACAATGCAGCCATAATACTAGAGTTTTCCAACGTTTGTCCTTTTAAGTGGTATAAAAACGTTTTCGGTTGCCCGTACTGTCGGTTCACTTCACCGGATTTCGTGTCTATTAAAAGTCATATGGTTGAACATCCTGTGAAATCAGATAGAGTCCAGACTTTACACAATTCGCGACCTGGCGACACTGTCAAAACAGATATCACTAATCTAAAATGCGAGCTGTGTGACAAACAGTTTGAGAATGTTGAAACTCTGATAGATCACCTTATAGAAAAACATGATAAGCCATTAGTGAAAAAACACGGTCCGGGTATCGTGTCCTATATATTAGATAATGGATTCACGTGCGGACATTGTAACGAATCTTTTGATCGGTTCTTGACATTGAACTCTCATGTGATTCAGCACAAAACTAATTTTGCCTGTTCTCAATGTGGCAAATATATGTCTACGCCCGAAGGTCTTAGAAAACATATTCTTAGGCGTCACGTGAAAACTCCTAGGATCGATTTTCGTCCAAAATTGAGTGATTATAATGATGCTCGACATAATGCTTCTGCCATTCTCGAATGTTCTAACGTGTGTCCTTTTAAATGGCATCGAAACGTATTTAGATGTGCgtattgtgattttacttcGGCTGATTTTGCTCCTGTCAGAGTACACGCTTTTAACATTCATCCGAAAAAACTTGAAGCCCTCCACTACTCCCGTCCAACAGAAATATTTAAGGCAGACATTACAGACCTCAAATGTGAACTATGTGACCAGCCTATAAAAGATATGAAATTGTTAATGAACCATTTAATAGAAAGTCACGGAAAGTCCATAAAAAAGGATTACGGCGCCGGAATCGTACCATTTCTGTTATGCGACGGTTTCACATGCGCCGACTGCGGCCAACAGTTCGATAGATTCATGAAGTTAAACATCCACGTGAACGATCATTACCCTAATTGTATTTGCTCCCAATGCGGGCAGGCTTTCTCGAGCGTAAACAGGCTAAGAGCTCACTCTGAGCAGCATAAAAAGAAGGTTGTCCAGTTCAAATGCTCCCCTTGCGGCGAGGTCTTTACCTCAAGATTCTACAAACAAAAGCACATGGAGACCAAACACGATATCCTTCCCCATAAATGCCCGTATTGCAGTGACGCGTTCAAATCGTATGCGCACAGGTTACAGCATTTAAATAAGTATCATGACAAAAAGATAGAGTTCCCTTGTCGATTGTGCTCCACAATATTTAAGACAGCTTCGAAACGCGCGGATCACATGAGACACTTTCACTTGAGAGATAAACAGTATTCGTGTACCATTTGCGACTACATGTGCACTAGCGTTACTCTGTTGAAAAAACATATGGGGAAACATTGTGGAGAGCGGAAATATAAATGA
Protein Sequence
MAEVLFSKDRSSYIEQYIGFLGISWKQKLDDFPDHRHNAAIILECSNVCPFKYYKNVFLCAYCQFTSPDFVDLKEHNNEHKERIFALGNVGPNDIFKVDVSNLKCELCQESMKDIPSLVEHLIKEHNKPINRKFKPGVIPYLLSNGFECADCDVTFNSFVPLNIHINKHYPDFICSICGEGFCSLFKLNGHLLRHKQKQTKFKCSNCGTLAIKWIQRRNNLTTGFGDSRDNAAIILECSNMCPFKFKKNVFECAYCQFTSPEFGAIKKHTEVHQDRAKAVQLMRSSMVCKADITDLRCELCQASMKSISMLCEHLTEIHKKFMKKEYEPGVVPYLISKDFTCADCGLNFDRFVKLNQHVNQHYPNFICSDCGQGFASAQRMQNHYSSHQKKAQVKCSICDEIFPSASRMRDHLMSMHNIEPGKWRPSIGDYRDARDNAAIILECSNISPFKWRRNSFGCPYCSYNSSHFELYKNHIMSEHSDRSNRIEILRNSRRNDPIKADVTNLTCDLCQENIDNIEILMDHLLEQHNKPIITDYSSGIVAYLLSNNSFICPYCAINFDRFKTLNAHVDEHILQCVCTQCGQLFSGAKKLGRHIHQYHAETQKYDDYGDSRRNASIILECCNVCPFKWYRNAYGCPCCAYTTPNFIDLKNHISGNHPTKSDRSRILRNSRPGDIVKIDVTNLQCDLCQEKIKDIATIMNHLVEKHDKPIVMNYGSGVMSFLLEGGFACVYCNESFDGFNFLNSHVNDHNLSCGCSECGQHFFNEDRLRKHIMRCHEKPRSTKLKSKFGYYDDARHNAAIILDYSNISPFKWYRNVYRCAYCEFTSADFGSLKTHDHPQCPKTEALRNSRPSEVLKADVSDLKCELCDQAIQDLKTLVDHLSETHGLIFKKQYGFGIEPFMVREGFKCADCGQQFDGFIKLSQHINVHYLNCVCPECGQAFSKPEKLRSHFEVHKRKTGRYKCSECGARFDSRYKKDLHLKSEHNILVNKCPYCDESFESYPQRLQHLNEKHGKKTDFPCRICPAVFKTATKRSLHTKSFHFKDNKFPCTICEYRSANLMGLRMHMVKHNKEKKYKCEICPKAYRQPGKRRLKVGEYNDARDNAAIILEFSNVCPFKWYKNVFGCPYCRFTSPDFVSIKSHMVEHPVKSDRVQTLHNSRPGDTVKTDITNLKCELCDKQFENVETLIDHLIEKHDKPLVKKHGPGIVSYILDNGFTCGHCNESFDRFLTLNSHVIQHKTNFACSQCGKYMSTPEGLRKHILRRHVKTPRIDFRPKLSDYNDARHNASAILECSNVCPFKWHRNVFRCAYCDFTSADFAPVRVHAFNIHPKKLEALHYSRPTEIFKADITDLKCELCDQPIKDMKLLMNHLIESHGKSIKKDYGAGIVPFLLCDGFTCADCGQQFDRFMKLNIHVNDHYPNCICSQCGQAFSSVNRLRAHSEQHKKKVVQFKCSPCGEVFTSRFYKQKHMETKHDILPHKCPYCSDAFKSYAHRLQHLNKYHDKKIEFPCRLCSTIFKTASKRADHMRHFHLRDKQYSCTICDYMCTSVTLLKKHMGKHCGERKYK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01209573;
90% Identity
-
80% Identity
-