Basic Information

Insect: Plagodis dolabraria
Gene Symbol: -
Assembly: GCA_963854805.1
Location: OY978447.1:24433264-24468998[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 3.2e-05 0.0052 18.9 1.4 1 23 421 443 421 443 0.96

2 18 0.007 1.2 11.5 1.1 1 20 449 468 449 471 0.94

3 18 2.2e-05 0.0037 19.4 5.6 1 23 490 512 490 512 0.98

4 18 0.0001 0.017 17.3 4.1 1 23 518 540 518 540 0.99

5 18 3.9e-05 0.0065 18.6 5.3 1 23 546 568 546 568 0.97

6 18 0.00011 0.018 17.2 6.7 1 23 574 596 574 596 0.97

7 18 0.00011 0.018 17.2 6.5 1 23 602 624 602 624 0.97

8 18 5.2e-07 8.6e-05 24.5 1.9 1 23 630 652 630 652 0.98

9 18 5.3e-05 0.0088 18.2 7.9 1 23 658 680 658 680 0.98

10 18 2.7e-05 0.0045 19.1 6.6 1 23 686 708 686 708 0.98

11 18 4.7e-06 0.00077 21.5 6.0 1 23 714 736 714 736 0.98

12 18 8.8e-06 0.0015 20.6 5.0 1 23 742 764 742 764 0.96

13 18 1.2e-05 0.0019 20.3 5.2 1 23 770 792 770 792 0.98

14 18 3.3e-06 0.00054 22.0 6.0 1 23 798 820 798 820 0.98

15 18 6.3e-05 0.01 17.9 7.9 1 23 826 848 826 848 0.97

16 18 4.3e-06 0.00072 21.6 5.6 1 23 854 876 854 876 0.98

17 18 0.00036 0.059 15.6 0.3 1 23 883 905 883 905 0.97

18 18 0.028 4.6 9.6 4.5 1 23 915 937 915 937 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	3.2e-05	0.0052	18.9	1.4	1	23	421	443	421	443	0.96
2	18	0.007	1.2	11.5	1.1	1	20	449	468	449	471	0.94
3	18	2.2e-05	0.0037	19.4	5.6	1	23	490	512	490	512	0.98
4	18	0.0001	0.017	17.3	4.1	1	23	518	540	518	540	0.99
5	18	3.9e-05	0.0065	18.6	5.3	1	23	546	568	546	568	0.97
6	18	0.00011	0.018	17.2	6.7	1	23	574	596	574	596	0.97
7	18	0.00011	0.018	17.2	6.5	1	23	602	624	602	624	0.97
8	18	5.2e-07	8.6e-05	24.5	1.9	1	23	630	652	630	652	0.98
9	18	5.3e-05	0.0088	18.2	7.9	1	23	658	680	658	680	0.98
10	18	2.7e-05	0.0045	19.1	6.6	1	23	686	708	686	708	0.98
11	18	4.7e-06	0.00077	21.5	6.0	1	23	714	736	714	736	0.98
12	18	8.8e-06	0.0015	20.6	5.0	1	23	742	764	742	764	0.96
13	18	1.2e-05	0.0019	20.3	5.2	1	23	770	792	770	792	0.98
14	18	3.3e-06	0.00054	22.0	6.0	1	23	798	820	798	820	0.98
15	18	6.3e-05	0.01	17.9	7.9	1	23	826	848	826	848	0.97
16	18	4.3e-06	0.00072	21.6	5.6	1	23	854	876	854	876	0.98
17	18	0.00036	0.059	15.6	0.3	1	23	883	905	883	905	0.97
18	18	0.028	4.6	9.6	4.5	1	23	915	937	915	937	0.99

Sequence Information

Coding Sequence: ATGAATCCGGAACACCACAATATCAACACGGGTGGTGGTCAGCCTCCTGGGAGTTCTGAGTCTCAGGTACAGAGAGTGCAAGCTGCGCAACAGCAGCAACAAGGAAACCTGCCCGCAACAACATCTGCCACAGATTTGAGAGTCAATACAGCGGCCGTGAATGTGGCATTGTCCAGTGTTGCGAAGTATTGGGTGTTTACTAACTTATTTCCTGGGCCGATACCACAAGTTTCAGTGTATGGATTGCCTACTGGAACTAGAATTGAAAATGGAAAGGCTGTACAGGATATTGGTCAACATGCAAGTATACTTAATGGAGATCCAAACATTATACTTGGGCATCATGGAGGACAGTCTCAGGTCACTGTGTCCGCAGGAGCCCAGCAAATACCTGTGTCACAGATCATTGCATCACAATCAGGGCAGACACATGAAGCACTTGTGGCTCATAGTCAGCACCAGGAGTTAGCACAACAGGCGTCAGGAGCAACGCAGGTTTCAGTTGGCACAGGGCAGTCAACTCATCAGCAGGTACCCAATAACCGGGTCGAATTTGTACAACACCATAACATTGATATGGGTCACCATTCACAACAGCACATAATGCAGCAGCAACTAATGGCGGCACGTCCTGAACACACCAACCAGCAGATCCAACTAACTGTCAGTGAAGATGGCATTGTTACTGTCGTGGAACCTGGCAGCAGTAAGATGGTAGACAAGGACGAACTACACGAAACCATCAAACTGCCTTCAGATCACACCCTTACTGTGCACCAGTTGCAGCAAATTGTGGGTCAACAGCTTGGAACTCAAGTCCTAGAGAACGTGGTTCGTATCGAGCAAGCGACCGGCGAGCCAGCCAACATCCTTGTGACCCACAATGCTGACGGCACCACATCTATCGAAGCCAGCGCCTCCGATCCGCTGGCCATCGTAAAGGATGAGAAGTCGCAGGGGAAGCTTGAGACGGCACAGTTCGCTATACCTGCTGAAATTAAAGATATAAAGGGCATCGATTTGAAGAGTGTGGGAGCAATGGGCATGGAAGGCGCAGTCGTTAAGATTTCCACTGGATCTGACCATGACATGACTGCCATGTACAAAGTTAATGTTGAAGACCTCTCACAATTGTTGGCTTACCATGAAGTATTTGGGAAGCTCAATTCTGATGGCCAGACGCAAAAAGggGCTGAAATAGAGATTGAAGTGCCGGGACCTAGCCAGGGAATGTCTGAAGCGGAATCGTCGCCCGGACACCATGCTTGTGATATCTGCGGAAAAGTGTTTCAGTTTCGATATCAACTTATAGTTCACAGACGATACCATGGCGAGAGCAAACCGTACACATGCCAAGTTTGTGGTTCCTCCTTCGCCAACCCTTTGGAACTGTCACGCCACGGGAAATGCCATCTTGccgGAGATCCAGCCGAGAGACACGCCAAAAGAATGGCCCAAGACAAACCTTACGCCTGCACAACTTGCCATAAAACTTTCTCGCGTAAAGAACATCTAGACAATCATGTGAGAAGTCATACGGGAGAGACTCCATACAGATGCGAGTTTTGCGCGAAAACTTTCACACGCAAGGAGCACATGGTGAACCACGTGAGAAAGCACACCGGCGAGACTCCGCATCGCTGTGACATCTGCAAGAAGAGCTTCACGAGGAAAGAGCACTTTATGAACCACGTCATGTGGCATACAGGTGAAACACCCCATCGCTGCGACTTCTGTTCTAAGACATTCACTCGCAAGGAGCACCTCCTGAACCATGTTCGTCAACATACCGGCGAATCTCCTCACCGCTGCAACTTCTGCTCGAAGTCATTTACAAGGCGCGAGCATCTTGTTAACCATGTACGGCAACACACCGGCGAAACTCCGTTCCAATGCGGCTACTGCCCCAAGGCTTTCACAAGGAAGGACCATCTCGTGAACCACGTCCGCCAGCACACAGGCGAATCTCCACATAAATGTTCATTCTGCACGAAGTCTTTCACCCGCAAGGAACACCTCACAAACCATGTGAGACAACATACAGGAGAGTCACCGCATCGTTGCACATACTGCGCAAAGTCGTTCACCAGGAAAGAACATCTCACCAATCATGTCAGACAGCACACAGGCGAGACGCCACACAAGTGCACGTTCTGCCCTCGCGCGTTCTCGCGCAAGGAGCACCTCAACAACCACATGCGGCAACACACCGGCATTACCCCGCATGCCTGCTCATACTGCAACAAGAGCTTCACCAGGAAGGAACATCTCGTCAATCATGTCCGGCAACACACGGGCGAAACTCCGTTCAAGTGCACATTCTGTTCGAAGTCGTTTTCACGAAAGGAACACCTCACAAACCACGTGAACCTGCACACTGGGGAAACGCCACACAAGTGTCCATTCTGCACTAAAACATTCTCCAGGAAAGAACATCTTACCAATCATGTCAGAATTCATACTGGAGAATCACCGCACCGTTGTGACTTCTGCCAAAAGACCTTCACTCGCAAAGAACACCTCACCAACCATCTGAAGCAACATACTGGAGACGCGGCGCACACTTGTAAGGTGTGCTCGAAGCCATTTACCAGAAAAGAACATCTTTTAACTCACATGAGATCTCACAGTTGCGGCGAGCGACCGTACAGTTGCGGTGAATGTGGCAAGTCATTCCCGCTCAAAGGCAATCTAATGTTCCATGAACGCTCGCATCAAAAAGCAGGCGGTGGCGCGCGGCCCTTCCGCTGCGATATCTGTAATAAGGACTTCATGTGCAAAGGACATTTAGTCGGCCATAGGCGTACTCATCAGGACGCAGGCGAAGCGCCGGCCGCTGAGCCGCGAACGGAAGCCGAGGAGGATTGCTCCGCCAAGTGTGTTAAAGTTGAGATCGACCCGTTAGCAGTCGATAGCAAACCCAATGTGGAAGATGTGCACTCGGCCGAAACAATAATTGTTCCCCAAACCTCACCAAACAATACTGCTGTGATGCAGATAACAAACCAACAAGTGAGAACCGCTTCTACTTCGAACACGCAGGGCATAACGTCCGCAACTTTCACACACTCGGTCACCGCGCAGCACCACGCTGGCACCGCAATTGCGCATCATCCGGTCAGTGTGACCTACTAG
Protein Sequence: MNPEHHNINTGGGQPPGSSESQVQRVQAAQQQQQGNLPATTSATDLRVNTAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPTGTRIENGKAVQDIGQHASILNGDPNIILGHHGGQSQVTVSAGAQQIPVSQIIASQSGQTHEALVAHSQHQELAQQASGATQVSVGTGQSTHQQVPNNRVEFVQHHNIDMGHHSQQHIMQQQLMAARPEHTNQQIQLTVSEDGIVTVVEPGSSKMVDKDELHETIKLPSDHTLTVHQLQQIVGQQLGTQVLENVVRIEQATGEPANILVTHNADGTTSIEASASDPLAIVKDEKSQGKLETAQFAIPAEIKDIKGIDLKSVGAMGMEGAVVKISTGSDHDMTAMYKVNVEDLSQLLAYHEVFGKLNSDGQTQKGAEIEIEVPGPSQGMSEAESSPGHHACDICGKVFQFRYQLIVHRRYHGESKPYTCQVCGSSFANPLELSRHGKCHLAGDPAERHAKRMAQDKPYACTTCHKTFSRKEHLDNHVRSHTGETPYRCEFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNFCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSFCTKSFTRKEHLTNHVRQHTGESPHRCTYCAKSFTRKEHLTNHVRQHTGETPHKCTFCPRAFSRKEHLNNHMRQHTGITPHACSYCNKSFTRKEHLVNHVRQHTGETPFKCTFCSKSFSRKEHLTNHVNLHTGETPHKCPFCTKTFSRKEHLTNHVRIHTGESPHRCDFCQKTFTRKEHLTNHLKQHTGDAAHTCKVCSKPFTRKEHLLTHMRSHSCGERPYSCGECGKSFPLKGNLMFHERSHQKAGGGARPFRCDICNKDFMCKGHLVGHRRTHQDAGEAPAAEPRTEAEEDCSAKCVKVEIDPLAVDSKPNVEDVHSAETIIVPQTSPNNTAVMQITNQQVRTASTSNTQGITSATFTHSVTAQHHAGTAIAHHPVSVTY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00250683;
90% Identity: iTF_00250683;
80% Identity: -