Pdol019231.1
Basic Information
- Insect
- Plagodis dolabraria
- Gene Symbol
- Lrrfip1
- Assembly
- GCA_963854805.1
- Location
- OY978448.1:3691621-3727249[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 3.1e-64 2e-59 203.2 13.4 1 221 158 373 158 375 0.94 2 3 1.4e-08 0.00091 20.4 2.9 222 297 533 600 530 603 0.76 3 3 0.49 3.1e+04 -4.3 12.8 194 270 584 658 574 677 0.61
Sequence Information
- Coding Sequence
- ATGGGGCATCGTTCAGAAGTGGCCACCCCTGATAACAGTGACGAGGAGAGTGGAGATGCCTTCACCGACGGAGATTTTGGAGACTCCGACGATGATACTGTTCTTGAACAAGTTgataaaaaaacttcaaatatcCCTGTCAATGAGACTGTTAATGATGAATTGCAAAAGAACATCACCAACGGTAACTGTTCACATAACGGACACGAAGAATCCCCTCAAACTGATCAACCAAAAGTAAATGGACGTAACAATAGTGGTAATCAAAGTGATATGGATAACTATAGTGCAACAGCAGACGTGAGACGGGACTCTCATGGGGATCAGAATCCATCCATTGTTGGAATTATTGGAGATCAGCATAATCATAAGGAAAATGTGGCGGTAGGGGGAAAGGGTTATGTAGGAGGTGTCACGAAGAGCGCGAAAATGTGTGGTTTGAAAAAAGGTAAAGAAGGCTCCAGATATGGGGCGGAGCAGAGGCTAGCAGCGCGACGAGCGGCGAGGGCGGAGGCTCGCGAGATCCGCATGCGCGAGCTGGAGCGCCAGCAGCGGGAGCAAGAGGACCATGCGGATAAAGCGTACGACATGTATGCAGAGACGGTCGGTCGGCGAGGCAACACGCGCCTCGCCGCGCTCAGTCCCGCCACCAGCCTGGTGCACTCGCCCAGGAGAAGCTCTGAGGACTCCGCCGATGACACGTTTAACATCAAAGATTTAAGGCACGAGTTGAAAGAAGTGGAGGAGAAGTTCCGCAAAGCGATGATTCTGAACGCTCAGCTGGACAACGACAAGGCGGCGCTGCACTACCAGCTCGAGCTGCTCAAGGACCGCATCCTCGAGCTGCAGGAGGAGCACGCACAGCTGCAGCGTGAGTACAAGGAGAAGTGCTCTGTGCACGAGCGGCTGCGGCGCGAGCACGTGTCGCTGGAGCGCGAGGTGAGCAGTGCGCGGGACGCGGTGCGCGCGCGcgacgcggcggcggcggccgcggGGTTCGCCTTCGCGGAGGCAGCGCCCGGCGCGCCGCACGCTGAGGGGTTCGGGGCGGTGCCGCCGCTCGCGCTGCTCTCCAGGGAACAGGACCAGGCGCTCGCGGACCAGGGGGAGGGCACGCTCGtTTATGGTACTTCGTCACCTAAAAATACACCACAAAGAAAAAAGAATAAGAAGAAGGGAAATGAAGACACGCATGAACattatcgtaataatttaatacctGGAGAACTGATCAATGAGACCATTGAACCACAGCTGATGACAGTATCTACAACTGAGATTTTGAAAGCGTCAAGAAAAGAATCACCATCTTCTCATTATGACAAGCTTTCCAAAGTAATGTCGGGCTCTTCAGAAAAAGCAAAAGCAGTTAAAGTTACTGAATCGACTCCATACTCAATTCCGGACAAACACAAAATAGTAATACTAGCAGACCAACAAGGGAAAGATGTGCAACACATGCTGCAAACACTTACTGGAGACAAGTATGAAGTATCTTGCTGCTTTAAACCAGGAGCTACTACAAAAAATGTACTTAGTAGCATGACTCGCGACTTGAAAAGTCTGAAAGAACATGATTTCATTATTCTCTTAAGTGACGTGCGGTTGCAGAGGCTGGTGAGCGCGAAGCAGGCGCTGGAGTCGGAGGTGCGCAAGCTGAAGCTGACGCTGAACGAGGAGCGCGCCGCCAGGCAGAACGGCGTCTCCACACCACACGATCAAGACTATGAAAACGAATTGGAGACCCTCCGCAAGTCGGTGTCGGAGGCGAAGGGGCGGGCGGCGCGCGCGGAGGCCGAGGCGGCGCTGCAGGCGGCGGGCGTGGCGCGGCTCGAGGCGCAGCTGCAGCGGCTGCGGGCGCGGCAGGACCTGCACGACGAGCAGGAGGAACAACTCAAGCACGAACGTCGCAAGCTGCAGCGGGAGGCGAGAGAAGCACTCAACCGAGTCGAAGAGTTAGAGACGGAGAACAGCCACCTGACGAAGCGGCTTGACAAACTCAAGAACGCCAAATCCGCTCTGCTCAAGGACCTGTGA
- Protein Sequence
- MGHRSEVATPDNSDEESGDAFTDGDFGDSDDDTVLEQVDKKTSNIPVNETVNDELQKNITNGNCSHNGHEESPQTDQPKVNGRNNSGNQSDMDNYSATADVRRDSHGDQNPSIVGIIGDQHNHKENVAVGGKGYVGGVTKSAKMCGLKKGKEGSRYGAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRGNTRLAALSPATSLVHSPRRSSEDSADDTFNIKDLRHELKEVEEKFRKAMILNAQLDNDKAALHYQLELLKDRILELQEEHAQLQREYKEKCSVHERLRREHVSLEREVSSARDAVRARDAAAAAAGFAFAEAAPGAPHAEGFGAVPPLALLSREQDQALADQGEGTLVYGTSSPKNTPQRKKNKKKGNEDTHEHYRNNLIPGELINETIEPQLMTVSTTEILKASRKESPSSHYDKLSKVMSGSSEKAKAVKVTESTPYSIPDKHKIVILADQQGKDVQHMLQTLTGDKYEVSCCFKPGATTKNVLSSMTRDLKSLKEHDFIILLSDVRLQRLVSAKQALESEVRKLKLTLNEERAARQNGVSTPHDQDYENELETLRKSVSEAKGRAARAEAEAALQAAGVARLEAQLQRLRARQDLHDEQEEQLKHERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -