Basic Information

Insect: Pimpla rufipes
Gene Symbol: Rreb1
Assembly: GCA_963932165.1
Location: OZ010641.1:2657765-2665100[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0081 0.69 10.8 0.0 1 23 52 74 52 74 0.97

2 16 0.00013 0.011 16.4 0.3 1 23 88 110 88 110 0.98

3 16 2.8e-07 2.4e-05 24.8 1.3 1 23 116 139 116 139 0.98

4 16 0.061 5.3 8.0 0.1 1 23 240 264 240 264 0.94

5 16 0.4 34 5.5 2.1 2 23 270 292 270 292 0.94

6 16 5.9 5.1e+02 1.8 0.4 1 19 348 366 348 368 0.89

7 16 0.081 7 7.6 0.1 1 23 483 505 483 505 0.96

8 16 3.5e-05 0.003 18.2 0.3 1 23 514 536 514 536 0.98

9 16 0.0022 0.19 12.6 2.9 1 23 542 565 542 565 0.97

10 16 0.00056 0.048 14.4 3.0 1 23 992 1015 992 1015 0.97

11 16 0.0008 0.069 14.0 0.1 3 23 1332 1352 1330 1352 0.97

12 16 1.1 96 4.1 6.5 1 23 1358 1381 1358 1381 0.97

13 16 0.055 4.7 8.2 1.6 1 23 1421 1445 1421 1445 0.95

14 16 0.66 57 4.8 3.1 1 23 1629 1652 1629 1652 0.96

15 16 0.014 1.2 10.1 0.4 2 23 1703 1724 1702 1724 0.94

16 16 1.6 1.4e+02 3.6 8.2 1 23 1730 1752 1730 1752 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0081	0.69	10.8	0.0	1	23	52	74	52	74	0.97
2	16	0.00013	0.011	16.4	0.3	1	23	88	110	88	110	0.98
3	16	2.8e-07	2.4e-05	24.8	1.3	1	23	116	139	116	139	0.98
4	16	0.061	5.3	8.0	0.1	1	23	240	264	240	264	0.94
5	16	0.4	34	5.5	2.1	2	23	270	292	270	292	0.94
6	16	5.9	5.1e+02	1.8	0.4	1	19	348	366	348	368	0.89
7	16	0.081	7	7.6	0.1	1	23	483	505	483	505	0.96
8	16	3.5e-05	0.003	18.2	0.3	1	23	514	536	514	536	0.98
9	16	0.0022	0.19	12.6	2.9	1	23	542	565	542	565	0.97
10	16	0.00056	0.048	14.4	3.0	1	23	992	1015	992	1015	0.97
11	16	0.0008	0.069	14.0	0.1	3	23	1332	1352	1330	1352	0.97
12	16	1.1	96	4.1	6.5	1	23	1358	1381	1358	1381	0.97
13	16	0.055	4.7	8.2	1.6	1	23	1421	1445	1421	1445	0.95
14	16	0.66	57	4.8	3.1	1	23	1629	1652	1629	1652	0.96
15	16	0.014	1.2	10.1	0.4	2	23	1703	1724	1702	1724	0.94
16	16	1.6	1.4e+02	3.6	8.2	1	23	1730	1752	1730	1752	0.98

Sequence Information

Coding Sequence: ATGTATTTATATCGCCTCCTTCTGATTACAGCGACCACCACGacaacagcagcaggagcGACGGCTGAAACGCGGGCGGAGCATCGACACGGCAACGAGACACAGACAGATGCGGCTTCATCGCCACTGGGAGCGGATCACCAGGACGGTAGCTACGCCTGCCCGGCCTGCCCGATAGTCCTGTCGTCGCCCCGCGAGCTGTCGAACCACCTGCGCGGCCACAATTCCCCTCGCAGCACGGACTACAGCGGCGAGGACGACTACACGTGCGGCGTCTGTCACAAGGTCCTGAGCTCAGCGAGCTCGTTGGACCGCCACGTCCTCGTGCACAGCGGCGAGCGTCCCTTCAAGTGCAAATACTGCGACATGGCGTTCACGACCAACGGCAACATGAATCGCCACCTGCGAACGGCTCACGGTGGTCTCTCGCCACGCGAGACGAGCTACACGGACAGCGAGGCGAGCAGCGACTCCGAAAAGCCTCCGAGCAAGCGTCGTCACATCGAGGAGGAGTACAACAACAACGAGATCGCGAAAACACGTTCGCCGGACCTGAACGATCATCACCGAGACTCCCCGACCTTCGTCGCCAAGCGAAAATGTCCGGATCTCTCGTCGGAAATCGACCTGGACACCCAGCGCAAACACAAAATCCTCCTGGGCAATTCTCGAACGGAAATAAAGTCGACGATCAACCTCACGGAGCCTCAGACGCTGCACAACTGCCCGGTGTGCGGTCGCCTCGATTTCGCGACGAGCGCCCTCCTCGAGGCTCACCTGGAGCGCAATCATCCGGAATTCCCCGCCAAGTGCGACGCCTGCAATCTCTCGTTCAAGAACCACCGAGTCCTGAATCTCCATCGCTTCATGATTCACTACAgcgacgccgccgcggcgaACAACGCCCGAAATCTCCGCAACTCCGTCGTCGGTTTTCACGATCTCAccttcgtcgatttttcctccgaCAAATTCCCGGccatcgcgcgcgccgtcTGCGAGCAGTCGCTGCATCGTCCGGCCTCCGGTGAGATCGCCAAGTTCCAGTGCGCCAAGTGTCTTCGCGCGTTTCCCTGCCGTTCGGCCCTCGACGCCCACGAGACCGACTGCGGAGTCGCGTGCGCGCAGACCCGCGGCTACGTCGACGATCACTCGCGGCGCGACGATTTCTTCGCCGGTCTGGATCTTCAGAACAAGGCGGCGCTCACCGAGGCCAAGGAGGGCAAAGATCTCGCGGACATTCAGAGCATAATCAGCGTCACCTCGGGCCCGATTCTGCAGAATTTCCCGCGTTCCGACGCCAGCACGCCCGAGCATCAGATCAAGATAAACCCGAACCTCGGGTCCTCGGGATCATCGGGAACTCCGTCGTCCGAGTATCatcaggaggaggaggcgcagGACGCGTTCGCCGCGGAATTTCGCAAGATGAAACTCAAAGGGGAATTTCCGTGCCGTCTTTGCACCGCGGTTTTTCCGAATCTGCGGGCTCTCAAGGGCCACAATCGCGCTCACATGGGCGTCGGACCCGGAATGCCGTATCCCTGCAACATGTGTCCCTACACGAGCACCGACAAAGCGACTCTCGTTCGTCATTTGCGCTCCCACAACGGCGATCGACCCTTCGAGTGTTCCCTCTGCAATTACGCCTTCACCACGAAAGCCAACTGCGAGCGACACGTGCGAAATCGTCACGGGAAGCTGACGCGCGAGGACATAAAGAGCGTCCTGATTTACCACCCGAGCGAGGATTACACGAACGAGGCGGGCTCGCTGGAGCAGCGAAGCTCGCCACGCGGGATTCGCGAGGAGGCGAGAAAGAGCCTCGTTTATCCCAGCGAGCGGGACGATTATTCGCATCAGCAGGCGATTTACTCGACGATGCCGATGGAGACGAAGCACGATTTGGGCAGCGTCTCCGACGACGGACATCAGGCGCCGCCGCGCTCGTTGGGGATGCAGACGCCGCGAGGaatttcctcctcctccctcgggCACTACGAGAGGCCCGAGGGACTCTCGAGGACTCCGAGTCGCAGTCTCCACTCGCTCGAGCTGAAGACCCACAGAATCGGTCATCAGACGCCGCAGGGGGAACGCCTGGCGAGTTCGGATTACGGGAAACTCGAGGACGACGGGGATTCGAGATCCTCGGAGGACGGCAGCGTCTCACTAGTCAGCGACGCCAAGTCCGACGTGACGCATCATCACCAAAGAGTCGAGGCTAGTCCGATGGACCTGAAGAAGAGCCCGGTCGCCGCGGGaatcgccgcggccgcggctgCCGCGGGAGGCGAAACTTCGGCGACCGGAGAAGACGCGCCGCTCGATCTGTCGATGGACGTTTTGGACCTgagcaaaaaatcgaagagcgACTACGGcgcggccgcggccgcggccgccgaGGCTGCGAcgaacagcagcagcgaggaCGTCGGGAGGAACCAGAAGGAATTCTACGACGCGACGAACCAATTTTTGCTCACCCAGGCGCTGCTCAAGGCCGGCCAGGCCGGAAACCCGGCGACCTCGCTCGAGGCTCTCTACGCGAACGCTCACATGATTTACCGTAATTTCGGTGGCTTCTCGGCCGCCGGAGTCGGCGCCGGGATTCTCCCGCCTTATCTCTTTAATCCTCACATGTTCGGGCAGGATTTCGCGATCAAGGATCGTCTGCAGAAGGAACTGGTGAGGGGTCTGCAGCTCACGAGCGGCGGGACTCTCGTGGAGCCGCCGATCGCGAACACCGCGTTCGCCGCGGCTTATCCGCAGGGTCGCGACATCCCCGCGCACTCGATGAGCGAGCAGGGCGACTACGCGAAATTGATGTCCTCGAAATTGCCGAGCAAGATGGTCAGTCCGAGGGAGAAGATCGACGGGAATTCGCCGTCCTCGAATTCCGTGAAGATGGTCATCAAAAATGGGGTTTTGATGCCGAAGCAGAAGCAACGGAGATACAGAACCGAGAGGCCCTTCACGTGCGAGCATTGTTCGGCGCGTTTTACCCTCAGGAGCAACATGGAGCGGCACATAAAGCAGCAGCACCCGCAGCACTGGAGCCAGAGGCCGCGGGGCGGCCACTCGACGAGGGGCCGACCGCCCGCGAATCCCCCGACGCTTCTCCACAACGCGAATCATCCGGCGGGCGGGCAGCAGTTGCCCCAGGTTTATCCGAATATCCTGCCGAAGATCGGAGGACAATCGGCTGCCGCGTCGGCTGCGGGTTacgagaaacacgcgatttccgATCATGTGAAGTACGCGATACTCGCGCAGCATTTGAAGGGCAGTAAGATGGAGGAAAACGACACGGAGGAGGAATTGGTGATCGACGAGGGCGCCGAGCGGGAAATCGTGGACGGCGAAGCTGCGGAAAATCGGCCGACGAGTCTGCTGAGGGGAAAATTGGAGGGCAGCAATTTGTACAAGGAGAACAATTTGAGGCaacagaagcagcagcagcagcagcagcagctgcagcagcagatGAGCGaggtgaaaaaatgtttgacgaaggaggaggaaggagacgacgaggagaacgaggaggacgaggaggccgACTGCTCGGCCGACGAGTGTCCGAAGGTGAAGATCGAGGCGCCGGAGGAgcaggatgaggaggaggaggaggaatcgAAAGACTGCGGGAGGAGCGAGACTCGAGGCGCCGCGGAGACGAAGGACGAGCAGAGCTCGCGCGACGGTCTGAGCGAGAGGAACGAGGACGGCGCGGCGGATCTCGCGAGCGTCTCCGAGCTCCTCGACAACGCGTCCCAGCAGTACCAGCAGTTTCAGCCGCAGTACATGAGCGACGAGGAGGGCCTCGTGGCGTCCACGAGCGACTGCAACAATTCCGGCAGCGACGAGAAATCCGACTCGGTGAATTCGGCCAACTCGGGGAACTCGAGCGcgtcgaagaagaagaagaagaaaaagaagaagaagaagaagaagaagtcggCGTACTCGATGGCGCCGAATCGCGTGATCTGTCCGTACTGCGAGCGACCGTTTCCCTGGACCTCGTCGCTCAGGCGTCACATTCTCACCCACACCGGACAAAAACCCTATCAGTGCATGCACTGCTCGCTCCTGTTCACCACCAAATCCAACTGCGATCGTCATTTGCTGCGCAAACACAAGAATAACGCGAACAAGATACGAAGGATGCGaaactcgtcgtcgccggagGCTCAGGAGGCGCCGGCGAACAACAGCAGCGCGACTTTCGCGATGCGCAACGTGCCCGAGCGGCCGTATAAATGCAACTTGTGCCCGAGTTCGACGTTCTCGACCGTGGGGAATCTCAAGAAACACAAATCGTCGAAACACTCGTcacgcggcggtggcggcggtggatTTAAGTCCAGCCGGCCGGAGTCGCCGGTCACCAGCGAGACGCAGAACAGCCCGATGGACTGCGCCAAGCACAACGATCAGAGCGGCTACGAGAGCCAGGAATCCAGCGTTTCGGAGAATATGGAGCATAGGGAGAGTAATATGGAGGTCGCTGAGCAATCGGAGCAGCAGACTCGGGTGGAGAACGCGGAGAACGCGAAGAGCGCCAAGTGCAGCGCGGAGAGCGCGAAGAGCAGCAGCGCGGAGAACGGGGAGGTCGTGGTGAAGATGGAGGTCGGCGAGCCGGTGGAAATTCCTCCGCTGGAGGCGGAGAGCGGCGGAAATATCGAGGCGAACGCGGTGGAAAATCATCAGGCGGCTGAAAATTTGGAGAATGCGGAAATTGCGATGGAGACCGCGGAGGCGGCGAATTTGGAGAACTCGGCGTCGAAGATCGTGGATAGCATGcagagcgcggcgagcgacgcGTCCAAGTCGCGAAGACCGTCGCCGAGATCGTCGCCCGGACCCACCGACGCGCCCTTCAAGTGCCATCTGTGCGACAGCGGATTCTCCGAGAGGCAGGACTGCTTGGAACACATCAGGATCAATCACACGCGATCCTACGAGATTCTCGTGGCGAAGGGAGCCCTGGATATGGATATCGAGACACcggaggagcagcagcagccgccccCGCCGCAGCATCATAGCGACGGAGAGGAGAAGCGAGGCAGGTTTCCGGATTACAGCAACCGAAAGGTCGTTTGCGCCTTCTGCATGCGTCGTTTCTGGTCGGCCGAGGATCTCCGTCGTCACATGAGGACCCACACGGGCGAGCGTCCCTTCTCCTGCGACATTTGCTGCCGTCGTTTCACCCTGAAGCACAGCATGCTGCGACACCGCAAGAAGCACGAGTCGGTGGATTCCACGATGTACGTGGGAACGAGCGGCGACGAGGAGTCGGGGCCGTCGCAGCCGCCGACGATAACGCCGCGTAGCagccaacagcagcagcagcagcagcaacagccgcCGTCGTTGATGAGCGCGACGAGCGGCGACTCGCGAATCCAGGAGCGAATCTCGTTGCCGACGGTGGCGACGGTGGCGACGGGCGACGCCGCGCCGAGTGGCCTGATGCGTTTCAACCCGTACGAGAAGCTCACGACCCTCACGGGGAAACTCGCGAACGCCGCCCAGCAGGCGTTTCACGACGGCGCCGACACCGAGAACGACCTGATCTCGAATCTCCTGGGGATTCGCGACAAGAGCATCATCGACAAGGTGCTGCAGGCGTCGGCGGACGACGCGGCGAAGCTTCTCGGCGTAAATCGAAGCCACgactga
Protein Sequence: MYLYRLLLITATTTTTAAGATAETRAEHRHGNETQTDAASSPLGADHQDGSYACPACPIVLSSPRELSNHLRGHNSPRSTDYSGEDDYTCGVCHKVLSSASSLDRHVLVHSGERPFKCKYCDMAFTTNGNMNRHLRTAHGGLSPRETSYTDSEASSDSEKPPSKRRHIEEEYNNNEIAKTRSPDLNDHHRDSPTFVAKRKCPDLSSEIDLDTQRKHKILLGNSRTEIKSTINLTEPQTLHNCPVCGRLDFATSALLEAHLERNHPEFPAKCDACNLSFKNHRVLNLHRFMIHYSDAAAANNARNLRNSVVGFHDLTFVDFSSDKFPAIARAVCEQSLHRPASGEIAKFQCAKCLRAFPCRSALDAHETDCGVACAQTRGYVDDHSRRDDFFAGLDLQNKAALTEAKEGKDLADIQSIISVTSGPILQNFPRSDASTPEHQIKINPNLGSSGSSGTPSSEYHQEEEAQDAFAAEFRKMKLKGEFPCRLCTAVFPNLRALKGHNRAHMGVGPGMPYPCNMCPYTSTDKATLVRHLRSHNGDRPFECSLCNYAFTTKANCERHVRNRHGKLTREDIKSVLIYHPSEDYTNEAGSLEQRSSPRGIREEARKSLVYPSERDDYSHQQAIYSTMPMETKHDLGSVSDDGHQAPPRSLGMQTPRGISSSSLGHYERPEGLSRTPSRSLHSLELKTHRIGHQTPQGERLASSDYGKLEDDGDSRSSEDGSVSLVSDAKSDVTHHHQRVEASPMDLKKSPVAAGIAAAAAAAGGETSATGEDAPLDLSMDVLDLSKKSKSDYGAAAAAAAEAATNSSSEDVGRNQKEFYDATNQFLLTQALLKAGQAGNPATSLEALYANAHMIYRNFGGFSAAGVGAGILPPYLFNPHMFGQDFAIKDRLQKELVRGLQLTSGGTLVEPPIANTAFAAAYPQGRDIPAHSMSEQGDYAKLMSSKLPSKMVSPREKIDGNSPSSNSVKMVIKNGVLMPKQKQRRYRTERPFTCEHCSARFTLRSNMERHIKQQHPQHWSQRPRGGHSTRGRPPANPPTLLHNANHPAGGQQLPQVYPNILPKIGGQSAAASAAGYEKHAISDHVKYAILAQHLKGSKMEENDTEEELVIDEGAEREIVDGEAAENRPTSLLRGKLEGSNLYKENNLRQQKQQQQQQQLQQQMSEVKKCLTKEEEGDDEENEEDEEADCSADECPKVKIEAPEEQDEEEEEESKDCGRSETRGAAETKDEQSSRDGLSERNEDGAADLASVSELLDNASQQYQQFQPQYMSDEEGLVASTSDCNNSGSDEKSDSVNSANSGNSSASKKKKKKKKKKKKKKSAYSMAPNRVICPYCERPFPWTSSLRRHILTHTGQKPYQCMHCSLLFTTKSNCDRHLLRKHKNNANKIRRMRNSSSPEAQEAPANNSSATFAMRNVPERPYKCNLCPSSTFSTVGNLKKHKSSKHSSRGGGGGGFKSSRPESPVTSETQNSPMDCAKHNDQSGYESQESSVSENMEHRESNMEVAEQSEQQTRVENAENAKSAKCSAESAKSSSAENGEVVVKMEVGEPVEIPPLEAESGGNIEANAVENHQAAENLENAEIAMETAEAANLENSASKIVDSMQSAASDASKSRRPSPRSSPGPTDAPFKCHLCDSGFSERQDCLEHIRINHTRSYEILVAKGALDMDIETPEEQQQPPPPQHHSDGEEKRGRFPDYSNRKVVCAFCMRRFWSAEDLRRHMRTHTGERPFSCDICCRRFTLKHSMLRHRKKHESVDSTMYVGTSGDEESGPSQPPTITPRSSQQQQQQQQQPPSLMSATSGDSRIQERISLPTVATVATGDAAPSGLMRFNPYEKLTTLTGKLANAAQQAFHDGADTENDLISNLLGIRDKSIIDKVLQASADDAAKLLGVNRSHD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00414570;
90% Identity: -
80% Identity: -