Basic Information

Insect: Pimpla rufipes
Gene Symbol: -
Assembly: GCA_963932165.1
Location: OZ010633.1:17496100-17498484[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.035 3 8.8 0.5 2 23 174 195 173 195 0.97

2 14 1.2e-05 0.001 19.7 1.4 2 23 205 226 204 226 0.98

3 14 0.03 2.6 9.0 2.7 2 23 233 253 232 253 0.94

4 14 1.3e-05 0.0011 19.5 1.1 2 23 351 372 350 372 0.96

5 14 1.3e-05 0.0011 19.6 0.6 1 23 409 431 409 431 0.97

6 14 1.2e-06 0.0001 22.9 1.8 1 23 437 459 437 459 0.96

7 14 4.4e-05 0.0038 17.9 0.6 1 23 465 487 465 487 0.98

8 14 4.5e-05 0.0038 17.9 5.3 1 23 493 515 493 515 0.97

9 14 1.1e-07 9.8e-06 26.1 1.0 1 23 520 542 520 542 0.97

10 14 0.00031 0.027 15.2 0.2 1 23 548 570 548 570 0.97

11 14 1.1e-07 9.6e-06 26.1 3.8 1 23 576 598 576 598 0.96

12 14 5.8e-06 0.0005 20.7 1.6 1 23 604 626 604 626 0.98

13 14 2.3e-05 0.002 18.8 1.1 1 23 632 654 632 654 0.94

14 14 0.00086 0.074 13.9 1.5 1 23 660 683 660 683 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.035	3	8.8	0.5	2	23	174	195	173	195	0.97
2	14	1.2e-05	0.001	19.7	1.4	2	23	205	226	204	226	0.98
3	14	0.03	2.6	9.0	2.7	2	23	233	253	232	253	0.94
4	14	1.3e-05	0.0011	19.5	1.1	2	23	351	372	350	372	0.96
5	14	1.3e-05	0.0011	19.6	0.6	1	23	409	431	409	431	0.97
6	14	1.2e-06	0.0001	22.9	1.8	1	23	437	459	437	459	0.96
7	14	4.4e-05	0.0038	17.9	0.6	1	23	465	487	465	487	0.98
8	14	4.5e-05	0.0038	17.9	5.3	1	23	493	515	493	515	0.97
9	14	1.1e-07	9.8e-06	26.1	1.0	1	23	520	542	520	542	0.97
10	14	0.00031	0.027	15.2	0.2	1	23	548	570	548	570	0.97
11	14	1.1e-07	9.6e-06	26.1	3.8	1	23	576	598	576	598	0.96
12	14	5.8e-06	0.0005	20.7	1.6	1	23	604	626	604	626	0.98
13	14	2.3e-05	0.002	18.8	1.1	1	23	632	654	632	654	0.94
14	14	0.00086	0.074	13.9	1.5	1	23	660	683	660	683	0.92

Sequence Information

Coding Sequence: ATGGAAGGTTTCAGAGTGAAAGACGGGCCAATGGATGCGCTAGCCATTAGCAGTCAGGTTATGGATGAAAACATTGTCAGCGTCGTGCTTAAGGAAGAACCCGCCGACAGATTTGGTCACGCGTACATCGAGGATATCTGTTCGGGAACGTTCGGAAAGGTTTTCCTACCTATCGACAGTCATGAAGTGGATTTCTCGGATGAAATGGTCAAACTGGAACTAGAGAGTCAATCGAGCGGACATCATAACTGGGCTGCTCAGTTAGCCACAGCGGCGTTGTGCGAGCGAGTCGACGGCGCGTCGCACAGGTGTCATCCGTTGGGTGGTGTGCACTTCGGTCAATTAGGCGAGAAATCGGcgggcgaggaggacgacggcgAGGacaacgaggaggacgaggaggaggaggaggacaacGACACCGGCGGGGAGGACAAGGGTGACCGGAGTCCGGCGGACAGGAGCAAGGAGAGACGCGACGAGGACGGGAGCTCCCATCAGCCCAAGTTCTACAAGATCCAGTGCTCGATCTGCAAAAAGTGGTTCCTCAACAACGACTCGATGATAACGCATCTGCGTAGCCACTGCGGCGGCAACGTCGCCGGTGGCGATCAGTGCCAAGTATGCCAGCAGAGCTTTCAGGACAACTCGAGCCTGCACGCGCACATGCTGACCCACGTGGGTATGAACCCGGTCGAGTGCAACATATGCCAGAAGCGTTTCGCCTACAAGTGCCTGCGTAATCACGTGCAGACCCACGtggccgcggccgcggcggccagCAAGCCCTTCGACAACTGCTGTCCAACGGGGATCCCGGGGATCCCCGGAATCGGCGGTGGCGTCGGGGCCGCGGGTGGCCTCGGTATCGGCGCCGATTACGCCTTCGAGAACGCGAACGATCCCGCGCGAAAGATGTACAACGATCGGGCGAATCTCGGCGACGACAGGCGAAAGGACATAATGCAGAGCAACAACAAGGTcgtcgacggcggcgacgcgagagtcggcggcggcgggggcgggggcggcggcggtggcggtggttTGCGGTGCGACATATGCAAGATGCGCTTCAAGGACCGCGACACCCTGAATCGTCACACCCTCGTGCACATGAGCGAGGGACCCTACAAGTACGACATATTCTCGGGCACCTTCCGCGACAAACCCGAGAGCGTGAACATGCAGCGCATGCACGCGACACACACGGGCGCGAAGCAATTCAAATGCACCCTATGCGAGCGCTCGTTCGGACAGCGCACCGCCCTCAACAATCACATGCTCGCGCACAGCGGCGAAAAGCCGCACGCCTGCAATATCTGCGAGAAAACGTACAAACGCAAGTCCGAGCTGATAAGGCACACGATGGTGCACACGGGCGAACGGCCGTACGAGTGCAAGGAGTGCCTGATGACGTTTCGCGAGAAAGCGAAATTGAATTCGCACATGCTCGTGCACACGGGCGAAAAGCCACACGAGTGTTACATCTGCCACAAGGCGTGCGCCCGCAAGTCCGATCTCAACAGTCACATGCTGTCGCACACGGGCGGCCAGTACGACTGCAAAGTCTGCGACAAGATCTTCACCCGCAAGTCCGATCTCAACAGGCACACGCTCATTCACACGGGCGAGAAGCCGTTCGCCTGCGAACTCTGCGACATGGCGTTTCGCGAGCGAACGCGGCTCAACTCGCACATGCTCGTGCACACGGGCGACAAGCGGCACGCGTGTCACATATGCGGCAAGAGCTTTCGCGAGAAGTCGAGCCTGAAGAAGCACATGCTCGTGCACACCGGCGATCGGCCCTACGAGTGCTTCGTTTGCAAAAAGACGTTCACCCAGAAGACGACGCTCAACAGTCACGTGCTCGTGCACACGGGCGAGCGTCCGTACGAGTGCGAAACGTGCCCGAAGGCGTTCAGGGAGAGATCCTCGCTGAGAAAACATTCTTTATTTCACACCTCCGAGCGGGGACACGAGTGCAACGTGTGcttcaaaaaattcacccACAAGGCTGATCTCGGCTCTCACGCGGCCATCGATCATCCCTCATAG
Protein Sequence: MEGFRVKDGPMDALAISSQVMDENIVSVVLKEEPADRFGHAYIEDICSGTFGKVFLPIDSHEVDFSDEMVKLELESQSSGHHNWAAQLATAALCERVDGASHRCHPLGGVHFGQLGEKSAGEEDDGEDNEEDEEEEEDNDTGGEDKGDRSPADRSKERRDEDGSSHQPKFYKIQCSICKKWFLNNDSMITHLRSHCGGNVAGGDQCQVCQQSFQDNSSLHAHMLTHVGMNPVECNICQKRFAYKCLRNHVQTHVAAAAAASKPFDNCCPTGIPGIPGIGGGVGAAGGLGIGADYAFENANDPARKMYNDRANLGDDRRKDIMQSNNKVVDGGDARVGGGGGGGGGGGGGLRCDICKMRFKDRDTLNRHTLVHMSEGPYKYDIFSGTFRDKPESVNMQRMHATHTGAKQFKCTLCERSFGQRTALNNHMLAHSGEKPHACNICEKTYKRKSELIRHTMVHTGERPYECKECLMTFREKAKLNSHMLVHTGEKPHECYICHKACARKSDLNSHMLSHTGGQYDCKVCDKIFTRKSDLNRHTLIHTGEKPFACELCDMAFRERTRLNSHMLVHTGDKRHACHICGKSFREKSSLKKHMLVHTGDRPYECFVCKKTFTQKTTLNSHVLVHTGERPYECETCPKAFRERSSLRKHSLFHTSERGHECNVCFKKFTHKADLGSHAAIDHPS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00653024;
90% Identity: -
80% Identity: -