Pruf018946.1
Basic Information
- Insect
- Pimpla rufipes
- Gene Symbol
- zfh1
- Assembly
- GCA_963932165.1
- Location
- OZ010642.1:14212546-14216102[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00015 0.013 16.2 1.2 2 23 101 122 100 122 0.96 2 18 8.2e-05 0.007 17.1 0.5 1 23 128 150 128 150 0.96 3 18 0.28 24 5.9 3.5 1 23 157 180 157 180 0.92 4 18 7e-07 6e-05 23.6 2.2 1 23 186 208 186 208 0.98 5 18 0.92 79 4.3 3.9 2 20 214 232 213 236 0.82 6 18 4e-06 0.00034 21.2 1.6 1 23 243 265 243 265 0.95 7 18 2.4e-07 2e-05 25.1 0.9 1 23 269 291 269 291 0.99 8 18 0.032 2.7 8.9 1.1 1 23 297 319 297 319 0.94 9 18 4.9e-06 0.00042 20.9 0.6 1 23 325 347 325 347 0.99 10 18 0.0018 0.15 12.9 3.8 1 23 520 542 520 542 0.98 11 18 4.4e-05 0.0038 17.9 4.2 1 23 548 571 548 571 0.96 12 18 0.045 3.8 8.5 4.2 1 23 578 601 578 601 0.94 13 18 2e-05 0.0017 19.0 0.3 1 23 607 629 607 629 0.97 14 18 0.0025 0.21 12.4 0.2 2 23 635 657 634 657 0.92 15 18 4.5e-06 0.00039 21.0 4.2 1 23 664 686 664 686 0.98 16 18 6.3e-06 0.00054 20.6 1.5 1 23 690 712 690 712 0.98 17 18 1.6e-05 0.0014 19.3 0.1 1 23 717 739 717 739 0.96 18 18 8.4e-06 0.00072 20.2 0.4 1 23 745 768 745 768 0.97
Sequence Information
- Coding Sequence
- ATGATGAAGCAGCCGCAGCCCGAGGCTGCCGACGAGGAGGTCGCGCCGTCGGAAAAGGAGCCCCTGGAGAAGGAGGCGAACAACACGGAGGAGACAAAACGCGAGAGGACCGCGAAGAAGACGCGATCGTCGCGAgcggaaaaaacgaagaaaagccCGGAGGCGAAGTGCGAGGCGCGAAAAAGTCCGTCACCGAAGCGCGAGTATTACTCGATGGACGACGACTTCGACGACGTGGACGACGTTCCCCTGGACTTCAGGCAGTACAAGGCGACCCACCGAGGCACGAAGAAGTCGCTCACCTGCGAGATCTGCTACCTCATCTTCGATCGCAAGAGCAAACTCACGAGTCACATGTTCAAGCACAGCGACTCGCGACCCCACATTTGCACGGTATGCTCGAAGGGCTTCAAGACCGGCGCTTATCTCGCGCGACACATGGAAATCCACGACGAGACCGTTCAAGAACACGCCTGCAGTCTCTGCGACTTTAAAGCTCGCACCAAACCCTATCTCAAGATTCATCACATAAGAAAACACACGGACGACTACAACTTCAAGTGCCAGGAGTGCGGAAAGCGTTTCAAGGTGCAGTCGGACTACACGACGCACATGAAGGATCACGACACCGAGTCCTGCGTGTGCGACATATGCGGCTCCTCGTATCCCAGCAAGAGTTCCCTCTACTTTCACAAGCACTACAAGCACAAAACGAAGGTCAAGGAGTTCGAGTGCCCGACGTGCAAGAAGCGCTTCAAGAGCCAGAAGAACCTCAACACTCACGCGGAGCTACACAAGATGAAATACGTGTGCGAGCAGTGCGGAATGGAGTTCAAGTCCAAGTACGGCCTGACGAAGCATCTGCGAACGCACTCGGGCGAGAAGTCGTATCTCTGTGCCATTTGCGGGAAGACCTTCGGTTGTCTGAGCTCGCAGAAGATTCATCTGCTGACTCACGTTGGCGAGCGTCCCTACGTGTGCGACATCTGCGGCCAGAGCTTCACGCAGAGGTCGCCGATGATGCTTCATCGCAGGAAGCATCCGGGGATGcatccaccgccgccgcccatCAAAATCACGAACCTTCTGCACGGCGTGCAGGACAAAATAATCGTCAACAAGAATCCGCAGAGCAATTCGAAGAACGAGGAAATTTGCGACGAAAGGAAGAGCGGGCGGGGGAGGAAGCCGACGAGAAACGCgaagaaaatcgagaaaaagaagaaatccgCACCACCGCCGAAACGGAGATGCGAGCAAAGATCCGTCAaagcgagacgaaaaatcgccgcggTCGGTGCGAGTGTCGAGAGAGATTCCACCGCGGACGAGGAAGATCCGTCCGAGAAACCGAAGTTGGGCCGAAGAACGCGGAAGCCAccgacgaggaagaagaaattgGAAGGAAGCTCGCGGGACGACGAGAACGATTCCGACAAGGAGCCCTCGAAATTCGTCGAAATAACGATAAAAGAGGAGGTCGAGGACGACAGCTCGCGCGACTGGCTCGATTCCGACGACGACGGGCCAAAGTCCGTGGAAATCACGAAGAAGAGTTACGACTGCCGAACCTGCGGAGCGTCCTACAAGCGTCGCTGTCTCTACAACAAGCACCTGCTGACGCACAGCAATCTGCGGCCCTACGAGTGCCCGACGtgtcacaaaaaattcaaatacaaCTTCGGCCTGACGAGGCACGTGAAGCAGCAGCACAGCGACGTGGCGCCTCATTACACGTGCAAAATGTGCGAGTTCACCACGAAACACGAGTATTATCTACAGATACATTTCGCCCGTAAACACACCGAGGAGTGCAAGTACAAGTGCAACATCTGTGGGAAAACGTTTAAGGTCGTCGGGCCTTACCGAGTGCACATGAACGACCACGAGAACGGCCCGCAGGTCTGCGACATCTGCGGGGTCTCGTATCCCAACAAAACTTCCCTCTACGATCACCGATACTACAAACACATGGAGAAAAATCATCCCTTTCAGTGTACCGTCTGCAAGAAACACTTTTCCACCGAGAAGAACTTGCAGACGCACATGGAGCAGCACAATCAGACCTACGTGTGCGAGGAGTGCGGGAAGAAATTCGCGAAGAAACCGTGCCTCGCGAAGCACCGTAAAGTTCACCGAGAGAAGATGTATCTGTGCCCGGTTTGCGGTCGCGCTTTCGCCAACAAAACCACGCAGCGGGTTCACATGATCACGCATTCCGGCGTGCGACCCTACATCTGCGACGTTTGCGGTCTTAATTTCACGCAACGCTCGTCGCTGATGATTCACTGGAAGAAGACGCATCCGGAGGCCAGCCAAGCGCCGCCGCCCGTCACGCTCAGGAATATCGTTCAGGCGACGAATCCGAGTGCTAATTGA
- Protein Sequence
- MMKQPQPEAADEEVAPSEKEPLEKEANNTEETKRERTAKKTRSSRAEKTKKSPEAKCEARKSPSPKREYYSMDDDFDDVDDVPLDFRQYKATHRGTKKSLTCEICYLIFDRKSKLTSHMFKHSDSRPHICTVCSKGFKTGAYLARHMEIHDETVQEHACSLCDFKARTKPYLKIHHIRKHTDDYNFKCQECGKRFKVQSDYTTHMKDHDTESCVCDICGSSYPSKSSLYFHKHYKHKTKVKEFECPTCKKRFKSQKNLNTHAELHKMKYVCEQCGMEFKSKYGLTKHLRTHSGEKSYLCAICGKTFGCLSSQKIHLLTHVGERPYVCDICGQSFTQRSPMMLHRRKHPGMHPPPPPIKITNLLHGVQDKIIVNKNPQSNSKNEEICDERKSGRGRKPTRNAKKIEKKKKSAPPPKRRCEQRSVKARRKIAAVGASVERDSTADEEDPSEKPKLGRRTRKPPTRKKKLEGSSRDDENDSDKEPSKFVEITIKEEVEDDSSRDWLDSDDDGPKSVEITKKSYDCRTCGASYKRRCLYNKHLLTHSNLRPYECPTCHKKFKYNFGLTRHVKQQHSDVAPHYTCKMCEFTTKHEYYLQIHFARKHTEECKYKCNICGKTFKVVGPYRVHMNDHENGPQVCDICGVSYPNKTSLYDHRYYKHMEKNHPFQCTVCKKHFSTEKNLQTHMEQHNQTYVCEECGKKFAKKPCLAKHRKVHREKMYLCPVCGRAFANKTTQRVHMITHSGVRPYICDVCGLNFTQRSSLMIHWKKTHPEASQAPPPVTLRNIVQATNPSAN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01497638;
- 90% Identity
- -
- 80% Identity
- -