Pruf015399.1
Basic Information
- Insect
- Pimpla rufipes
- Gene Symbol
- lola
- Assembly
- GCA_963932165.1
- Location
- OZ010639.1:7014095-7018042[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.3e-05 0.048 13.7 0.0 6 42 213 249 208 251 0.74 2 4 5.1e-11 5.8e-08 32.6 0.0 5 43 262 300 259 302 0.86 3 4 0.018 21 5.3 0.0 7 34 316 342 312 347 0.84 4 4 2.9e-12 3.2e-09 36.7 0.1 4 39 373 408 370 413 0.93
Sequence Information
- Coding Sequence
- ATGTCCGCCGCGGCGACAGTAgcgagcggcagcggcgagccACAGCAGGTCGAGGAGAGCAGCTACTGCTTCAAATGGAGCGACTACCAGAATCACCTGCCGGGGGTGGTGCGACAGCTCCTCGAGGAGGAGTGCATGGTCGACGTGACCCTCGTCGCCGCCGGAGAGCGCATACAGGCCCACCGAATCGTTCTGTCCTCCTGCAGCACTTTGTTTCAAgaaTTGCTCAGCCAGGTGAACGAGGACCACTCGACGATAATACTGTGCGACGTTTCCGCTCAGGACGTCAGAGCTATTGTCGATTACAGCTACCATGGCGAGGTTCGAATTCCCGTTGACAATATCGGCAATTTGCTGGAGGCCGCGCATTCCCTCAAAATTAGCGGCCTCATGGAGATTGACGGACTGGACGAGAACGATGGAATTATATGCGCAAAAGACTCGAGCGAGGACTTGACCAAGGAATCGTCGATGGAATTTCACGAGTCTGACGAGAAAGCAGCGGAGGAATTTTCGGGAGAGAGGAGCTTCAAGAAGAGCACCTCGAGCAGCGAGAAGGACGACTGCGCGGGCAAGAAAAACAAGCGAAAGCGTCGGAGGGATTCGGTGAAACGCGAGTACAACGAGGATATGCTGGTGTCGGCGATAGACGACCTGAAGGCGGGACAGACGCTCGTGGAGGCGGCGACGAAGAACAACATACCGCGTTCCACGCTCTACATGCGCGCCAAATCGCTGGGGATACAGCTGAACGCCTCGCGAAACGAGTATCCCGCGGAGTGCATGAAAGCGGCGATGGACGCGGTAATCGGGGGTCTGAGCCTGCAGCAGGCTTCGGAAAAATTTTACATACCAAAGACTGTGCTCTGGCGACGAATACAGAAGGAGGGATACCAGGTATTGCGCTCCGAGCTCAAGAGATCCTACGGATCGGACAAGAGGGAAGCGGCGATCAAGGCGCTGCAGAGAGGCGAGAATCTCACGAAGGTCGCCCTCGAGTTTCAGATACCAAAGACGACGCTGTTTCGCGACAAAGTGCGACTGGTGGACGAGGGCAAATTGCCGGAGTCGTTCTGGAAGAAGCGGAAAGCCGGCGACGAGGAGGTCAAGCGACTGCGACTCGAGGAGGCCGTGGCGGCTTGCAGGGGCGGTAAAATGTCTCAGGCCGTGGCCTCCGTCACCTACAGAATCCCGAAAACCACAATCTGGCGCAGGCTCCAGCAGGAGGGAAAGAGCGCGTCTTCCGAGCGCCACCATCAAACTGGAGCAGCACCGCCACCGCCCAAAGCTGGAGAACGAAACGCCCAACTTCAAGAGGGAATCAGCGCCTCGAAAAACCCACAGACTCCCGAATTTTCGCTTTGCGAGGTATCGTCGGAAATTCCCATAACGTACATAGACGACAACAGTTTACCGGAGGATTCGGTTATAATTCTAACGACAGAAGACGTGGACGGCCTTAATCTCGAAACGGCCGGGAGACAAATAATCGTGAACCAAgacTCTGGCCAGGAGTACGTGCGATGTGCCTTAAGCATAGGGGAGAACgcggagagcagcagcagcagcggctcgGCCGGCTATCATCAGCCGGCGGAGAGCTAA
- Protein Sequence
- MSAAATVASGSGEPQQVEESSYCFKWSDYQNHLPGVVRQLLEEECMVDVTLVAAGERIQAHRIVLSSCSTLFQELLSQVNEDHSTIILCDVSAQDVRAIVDYSYHGEVRIPVDNIGNLLEAAHSLKISGLMEIDGLDENDGIICAKDSSEDLTKESSMEFHESDEKAAEEFSGERSFKKSTSSSEKDDCAGKKNKRKRRRDSVKREYNEDMLVSAIDDLKAGQTLVEAATKNNIPRSTLYMRAKSLGIQLNASRNEYPAECMKAAMDAVIGGLSLQQASEKFYIPKTVLWRRIQKEGYQVLRSELKRSYGSDKREAAIKALQRGENLTKVALEFQIPKTTLFRDKVRLVDEGKLPESFWKKRKAGDEEVKRLRLEEAVAACRGGKMSQAVASVTYRIPKTTIWRRLQQEGKSASSERHHQTGAAPPPPKAGERNAQLQEGISASKNPQTPEFSLCEVSSEIPITYIDDNSLPEDSVIILTTEDVDGLNLETAGRQIIVNQDSGQEYVRCALSIGENAESSSSSGSAGYHQPAES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00343092;
- 90% Identity
- iTF_01207495;
- 80% Identity
- iTF_01207495;