Basic Information

Insect: Pieris rapae
Gene Symbol: Gzf1_1
Assembly: GCA_905147795.1
Location: LR990585.1:6377083-6382657[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0016 0.12 13.0 0.7 3 23 72 92 71 92 0.98

2 12 0.016 1.2 9.9 0.7 2 23 99 121 98 121 0.95

3 12 0.078 6 7.7 0.2 2 23 129 151 128 151 0.93

4 12 0.00019 0.015 15.9 2.0 1 23 157 179 157 179 0.96

5 12 1.2e-05 0.00091 19.7 7.2 1 20 185 204 185 207 0.96

6 12 0.0076 0.58 10.9 2.4 1 22 213 234 213 234 0.95

7 12 0.034 2.7 8.8 1.3 3 19 252 268 251 273 0.92

8 12 2e-06 0.00016 22.1 1.1 1 23 593 615 593 615 0.97

9 12 6.2e-05 0.0048 17.4 2.0 1 23 622 645 622 645 0.92

10 12 0.02 1.5 9.6 2.6 1 23 653 676 653 676 0.96

11 12 0.00015 0.012 16.2 1.6 1 23 682 706 682 706 0.97

12 12 7.8e-05 0.006 17.1 2.4 1 22 712 733 712 733 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0016	0.12	13.0	0.7	3	23	72	92	71	92	0.98
2	12	0.016	1.2	9.9	0.7	2	23	99	121	98	121	0.95
3	12	0.078	6	7.7	0.2	2	23	129	151	128	151	0.93
4	12	0.00019	0.015	15.9	2.0	1	23	157	179	157	179	0.96
5	12	1.2e-05	0.00091	19.7	7.2	1	20	185	204	185	207	0.96
6	12	0.0076	0.58	10.9	2.4	1	22	213	234	213	234	0.95
7	12	0.034	2.7	8.8	1.3	3	19	252	268	251	273	0.92
8	12	2e-06	0.00016	22.1	1.1	1	23	593	615	593	615	0.97
9	12	6.2e-05	0.0048	17.4	2.0	1	23	622	645	622	645	0.92
10	12	0.02	1.5	9.6	2.6	1	23	653	676	653	676	0.96
11	12	0.00015	0.012	16.2	1.6	1	23	682	706	682	706	0.97
12	12	7.8e-05	0.006	17.1	2.4	1	22	712	733	712	733	0.96

Sequence Information

Coding Sequence: ATGGAGTCTAATATATCTTTTTATAGTTTACCATTTGTAGATTCGGAAAATTCAGAATCGGGTTTGTTTAGAAGAGGAAACGAATGTAATTTCGATATACATAATCCACTCTCTTCGAGCGGCGCTTTGTTAGGAGGCGACGATGTCCTCGCACAATTTCTCACAGACGGTCCCCTCGAAGAACCCGATCTTAACGGCCCGACGACCTTGCTCTGTGAAATCTGTAAAAAGAAGTTCGACAATGCTAAGAAATATTATGGCCATTTGCGAGTTCATTCCAAAGATAATTTGTGGGTTTGTGATAAATGTCCAAATCAGAAATTTTCAATTAAACAAAACCTAATGAAACATTATCTAACTCATAAACCATTAGCTAGAGTATGGAAATGTCCACAGTGTTCTATGGTTTTTGAAGCTCTTTGGCGTTTACAACAACATCTTTTTTCTAAACATTTAAACTACAGACCCCATAAATGTGATGTGTGTGATAAATCATTTCTCAAGGCCTCTGATTTGAAAAAACACAAAGACATTCATGATGGTTTAAATAGATTTTCATGCACCAAATGTCACAAAAAGTTTAAAGATAAATCTAATTTGAATCGTCACATGGTTTGTCATACTAAGGAGAAGAAATACTGTTGTTTGGGCTGTCAAAATAGATACTCCCAGCTGGCTACATTAAAACGTCATCAAAAAACTTGTACTCAATTTGTAGACACAGCCAAAGACAAAACTACTAGAAAAAACTATTGTCGGGAATGTGGCATGTCTTTTCAGTATAAGAGTGCATTGTTGGAGCACTGTGTCAGGCAACACACAGAAAATGGAACAGATACAAAACAAAATACTGATGGAAATAAAATTGAGAATATTGTTGATGACATACTATCAGTGGAAGATGATTACATGACTATGTCAACAAACCATGAAATATTAAATACTTTTAATAATAATACAAGTTATTCAAATGCTACTCCAGATGATAATTTAATGCAAATAGAATTTTTAAAAGATATGAATCAACTACATTCCTTAGATGACGAGTTCCTATATAATGATTTAGATTTTGACAGCTTACAAAATAGCCAAATCTTTAATATGAACACTAATGATATGGATTACAGTGGCAATGGGGAAATATTTGACTATACAATAGGTAGCAAAAGTATGGATCAAGATTTGATGAATGCTCTTGGACGAAATGATAATTTACCTGAAGATTTATTTAATTTAAACACATTTCCTGATAGGCCAGACATACCTCCCACTTTGCCTGATGAGTGTGCCACTATTTTCGAAAGCGATGTTGATTTAGAAGCGAGTACAAATTTAGCCGCAAATTTAAATCAGCTTATTGGGGAAAATACTGTGCAGTATATTTCTACTGAAGATGATGATACATTTATCATAAGCCTAAACAGTGAAATCGACGCCGAGAAATTACAAGATATGTTAAATATTGATGTTGAACTAGTCAATAGTGAAGAAAAAATCGAAATGGGTTTGATAAAGGACGATTATGTAGTTAAACAAGAAAATAATCTCTTGAATAACATAGTACCAGTCATTATTAAAGTAGAGCCAGAAAACGTAAACAATTCAACAGGGACAAATGAGAGTAATATTAAAAAATATAAAAATGCGTTTAATAAAAACATAGTTTTGATTAAAATAGGAGAACAAAATAAAACTTGTAAAGTGGAATTAGATGAAGAGAATTTAAATATTAAAGAAAGTAGAGACAAATCCTGTAATAATAAAAAGTCAGTGGAGTTCATTTGCAATACTTGTAATAAAGTTTTTACCAAAAAGGATAATTATAAATCTCACATAGCAATTCATAATCCGTCCCTTCGTCGTCATCGTTGTGACGTATGCGGCGTTCGCTTTAGTTACCGTTCGACACTTAATAAACATCATGCGGCCGCCCATGAGCCGCGGACCTTGCCGGATCACACGTGCCCGCACTGCCCTTCACATTATTCCGCTGCATGGATGTTAAAACAACATATCGAACGTTCTCACGAGGGTATAACACGTTTCGAGTGTGACGCAGAAGGTTGCGGAAAGCGGTTCTTCAAAAAGTGCGATCTCGTGGTGCATCAACGGTATCACACGGGCGAGCGGCCATTTTCGTGCGACATATGCAAGCAGCGTTTTCCACACATATCACATCTTAAAAGACATGAACGCACCGTCGACTGCACTAAAAGGATTCGTAAGAAATGA
Protein Sequence: MESNISFYSLPFVDSENSESGLFRRGNECNFDIHNPLSSSGALLGGDDVLAQFLTDGPLEEPDLNGPTTLLCEICKKKFDNAKKYYGHLRVHSKDNLWVCDKCPNQKFSIKQNLMKHYLTHKPLARVWKCPQCSMVFEALWRLQQHLFSKHLNYRPHKCDVCDKSFLKASDLKKHKDIHDGLNRFSCTKCHKKFKDKSNLNRHMVCHTKEKKYCCLGCQNRYSQLATLKRHQKTCTQFVDTAKDKTTRKNYCRECGMSFQYKSALLEHCVRQHTENGTDTKQNTDGNKIENIVDDILSVEDDYMTMSTNHEILNTFNNNTSYSNATPDDNLMQIEFLKDMNQLHSLDDEFLYNDLDFDSLQNSQIFNMNTNDMDYSGNGEIFDYTIGSKSMDQDLMNALGRNDNLPEDLFNLNTFPDRPDIPPTLPDECATIFESDVDLEASTNLAANLNQLIGENTVQYISTEDDDTFIISLNSEIDAEKLQDMLNIDVELVNSEEKIEMGLIKDDYVVKQENNLLNNIVPVIIKVEPENVNNSTGTNESNIKKYKNAFNKNIVLIKIGEQNKTCKVELDEENLNIKESRDKSCNNKKSVEFICNTCNKVFTKKDNYKSHIAIHNPSLRRHRCDVCGVRFSYRSTLNKHHAAAHEPRTLPDHTCPHCPSHYSAAWMLKQHIERSHEGITRFECDAEGCGKRFFKKCDLVVHQRYHTGERPFSCDICKQRFPHISHLKRHERTVDCTKRIRKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01205956;
90% Identity: iTF_01205956; iTF_01203465; iTF_01205141; iTF_01202684;
80% Identity: -